rs260110210 SNP Detail

Summary

• ID
  rs260110210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146679796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACCTTAAA CCCTCTCTAA CACCTTGAGG
  GGAGTGGCCT CTTTAGAGCC TGAGCCCCGG ACAGAAGAGC AGCCTTAGAA TGCAGGTCTG
  TCCAGGTTTT AAGCCACAAC ACTTAAGGCC AAGGACCAAA GCAGCTTCCA GGCCCTTCAC
  Y
  TTCCAGGCCC CTTCACTTCC CCACCCTTCA CAATTTTCCC TTCTACCAAC CACCTCCTCC
  CCCTTCAGAA TTTTTTTCTC CCTGGAGGAA GAATATCCTG AAATTCTTGT GAGTTTACAT
  CTGTTAACTT GGAGTCATTT CAGGCCAAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320546136	CHEV_2_146663612	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260110210					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146679796 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12370	CpG island 12370	1330 bp distal
Cpgi12371	CpG island 12371	716 bp distal
Cpgi12372	CpG island 12372	1492 bp proximal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	436 bp upstream
Gm57437	predicted gene, 57437	296 bp downstream
Rr566735	regulatory region 566735	346 bp proximal
Rr566736	regulatory region 566736	920 bp proximal
Rr566737	regulatory region 566737	1655 bp proximal
Tssr20612	transcription start site region 20612	1112 bp upstream