rs257442557 SNP Detail

Summary

• ID
  rs257442557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156286610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATACAGTG TATTTGGGGG
  GGGGGGATTG TGTATATGTG AGTGCAGGAA ATTAGAAATT TAGAAGAAGG AACTGAATAT
  ATAAATTTTC TTTCTTTCTT TATTTTGCTT ATATGCATGC ATATGTGTGC TTATACATGT
  CAGAGATTAA TGTTGAATGT TTTCTTCAAT CACTTTCCAC ATAGCCATCT TTCCAGCCCA
  R
  TATTTAAAGA AAATTAAAGA AGTAGGACCA CCAGTAGGGT GTCTAGCCCC TCCTGTGGTC
  TCAGGCCACC TCCATTGAAT GGAGGCAGCT GCCAGGCTAC GCTGTGCTTA GTAACCTGAG
  TACAAAATGT CTGTATGTAT AGCAGTGTAA CTCAGAATGA AAACAATAGC AACCATTAAA
  ATAATAATGG CCCTGTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445962	CHEV_4_155576262	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257442557					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156286610 () rs orientation: forward

Symbol	Name	Function Class
AW011738	expressed sequence AW011738	1131 bp upstream
Cpgi15503	CpG island 15503	630 bp proximal
Isg15	ISG15 ubiquitin-like modifier	1357 bp upstream
Rr398932	regulatory region 398932	846 bp upstream
Rr606695	regulatory region 606695	1368 bp distal
Rr606696	regulatory region 606696	1083 bp distal
Rr606697	regulatory region 606697	536 bp proximal
Rr606698	regulatory region 606698	556 bp proximal
Rr606699	regulatory region 606699	1162 bp proximal
Rr606700	regulatory region 606700	1630 bp proximal
Tssr40795	transcription start site region 40795	1139 bp upstream
Tssr45019	transcription start site region 45019	1348 bp upstream
Tssr45020	transcription start site region 45020	1320 bp upstream
Tssr45021	transcription start site region 45021	1307 bp upstream