rs255936223 SNP Detail

Summary

• ID
  rs255936223
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156285483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGAGCTG TGGGTGTGAA
  GAGGCGGAGT TTCCAGAAAC CAGAGCTATT TTCTGTTTCG GTTTCCTTTT CCTACGGCAT
  ACCTTAAATG AGTGGGAAAA CCAAAACTGA ATGAAAAGAA ACTGTAGTTG GGAAGGAAAG
  GGACTGGCTC TCAAGGGTCA AAGCTGTAAC CAGGCCTGTG TGCTCTAAAA CTCCCTAAAC
  R
  CCCTTCAGGT CCTTCACAAG GCATGTAAAA GTCAGAATAG GAACGAATAA TAGAAAATGT
  ATTTGTCGTT TGTTAGCTTG GAAATTAGTT GTCTTGGAAA ATGGCATAAT AATTCAGAAA
  CTGCATAACA TAGTACCAAT CAGAATTGCC CAAAGACAAC TGCTATTGGT TATTAGTTTA
  GAACAATAGT TTTTTTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445957	CHEV_4_155575135	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255936223					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156285483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15503	CpG island 15503	1757 bp proximal
Gm46878	predicted gene, 46878	1505 bp downstream
Isg15	ISG15 ubiquitin-like modifier	230 bp upstream
Rr398932	regulatory region 398932	1973 bp upstream
Rr606695	regulatory region 606695	241 bp distal
Rr606696	regulatory region 606696	within coordinates
Rr606697	regulatory region 606697	1663 bp proximal
Rr606698	regulatory region 606698	1683 bp proximal
Tssr40794	transcription start site region 40794	1485 bp downstream
Tssr45015	transcription start site region 45015	1423 bp upstream
Tssr45016	transcription start site region 45016	1360 bp upstream
Tssr45017	transcription start site region 45017	1290 bp upstream
Tssr45018	transcription start site region 45018	989 bp upstream
Tssr45019	transcription start site region 45019	221 bp upstream
Tssr45020	transcription start site region 45020	193 bp upstream
Tssr45021	transcription start site region 45021	180 bp upstream