rs253932258 SNP Detail

Summary

• ID
  rs253932258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156285689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCCTTC ACAAGGCATG
  TAAAAGTCAG AATAGGAACG AATAATAGAA AATGTATTTG TCGTTTGTTA GCTTGGAAAT
  TAGTTGTCTT GGAAAATGGC ATAATAATTC AGAAACTGCA TAACATAGTA CCAATCAGAA
  TTGCCCAAAG ACAACTGCTA TTGGTTATTA GTTTAGAACA ATAGTTTTTT TTTGGGGGGG
  R
  GGGGCTTGTA GGAAGCATTT CTGTCCTAGA ACAGTTTATT AAGACCCTAT TGTAGCTGGG
  CCAGGGCGCA CACCTTTGAT CCCAGCACCG GGGAAGCAGA GGCAGGTGGA TGTCTGAGTT
  CAGGGCTAGC CTGGTCTACA GAACAAGCAC CAAGACTCTG TCTTGAAAAG CCAAGAGAAC
  AAACAAAGTA TTGCTCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445959	CHEV_4_155575341	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253932258					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156285689 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15503	CpG island 15503	1551 bp proximal
Gm46878	predicted gene, 46878	1711 bp downstream
Isg15	ISG15 ubiquitin-like modifier	436 bp upstream
Rr398932	regulatory region 398932	1767 bp upstream
Rr606695	regulatory region 606695	447 bp distal
Rr606696	regulatory region 606696	162 bp distal
Rr606697	regulatory region 606697	1457 bp proximal
Rr606698	regulatory region 606698	1477 bp proximal
Tssr40794	transcription start site region 40794	1691 bp downstream
Tssr45015	transcription start site region 45015	1629 bp upstream
Tssr45016	transcription start site region 45016	1566 bp upstream
Tssr45017	transcription start site region 45017	1496 bp upstream
Tssr45018	transcription start site region 45018	1195 bp upstream
Tssr45019	transcription start site region 45019	427 bp upstream
Tssr45020	transcription start site region 45020	399 bp upstream
Tssr45021	transcription start site region 45021	386 bp upstream