rs252958237 SNP Detail

Summary

• ID
  rs252958237
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135584311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCATCT GTGTGGATGG
  TGATGAGTGG ATTCGAGATT GCTGTGGGGG AGAGGAGTCG TGGAGATTGG GGCGAGTGTA
  ACAATTTTTC GGTTAAATGG AGTGATCCAC GTGTTTTCGC GGAAATCTCT TTGAAAACGA
  GGTGCTGGAG AGACCGCTCC CGTTAGGGAC CTTCGTGATT AACTTGGGTG AACGGAGGCG
  R
  TACTTTTAAT AAAAGTCCGC CTTGTCTCCG GGCGTAGCCC CAGCACTCAG AAGACGGGTC
  TGGGAGTTCG AGTCTCGCCT GGTAAAGGGC TTTGTTTTCA CAGCTTGTCC TTTGCTTTGA
  ATTGCCTTCG GAATTTTTCA GAAGAGATTT TTATCACAGG ATTACTCTTC GTGTTCGTAC
  AAAATAAACT CCGAAGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363377227	MGP_WTSI_4_135412915	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252958237					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363377227	MGP_WTSI_4_135412915	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135584311 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15082	CpG island 15082			within coordinates
Gm57106	predicted gene, 57106			1077 bp upstream
Gm69173	predicted gene, 69173			627 bp upstream
Rr367748	regulatory region 367748			1240 bp downstream
Rr398596	regulatory region 398596			874 bp downstream
Rr602160	regulatory region 602160			1824 bp distal
Rr602161	regulatory region 602161			1243 bp distal
Rr602162	regulatory region 602162			1088 bp distal
Rr602163	regulatory region 602163			137 bp distal
Srsf10	serine and arginine-rich splicing factor 10			Intron
				Noncoding-Transcript-Variant
Tssr39638	transcription start site region 39638			1256 bp downstream
Tssr39639	transcription start site region 39639			876 bp downstream
Tssr39640	transcription start site region 39640			840 bp downstream
Tssr39641	transcription start site region 39641			749 bp downstream
Tssr39642	transcription start site region 39642			320 bp downstream
Tssr39643	transcription start site region 39643			886 bp upstream
Tssr43999	transcription start site region 43999			1103 bp upstream