rs249897289 SNP Detail

Summary

• ID
  rs249897289
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23249693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCCTGG TGTGACGCCT
  GGGGCCCAAA TTCGCTAGCT GGGCGAGCTT TCCATGAAAA GGCCGGACGC TGAGGCTCCC
  ATTGCGCGGG TCCCCGCGGC TCCCGCCCGA GTAGCGGCGC GCGCCTTCCC CGGAGAGGTC
  AACCGGGAGC CTTCGGTCGC CGAGAGCAGA ACCCCAGGCA CGCTCCTGGG GCTGCGGACC
  K
  TAGACAAACC CCCGCCGTTC TCAAGCCAGT TCCCGGAGGA AGCTGAGCGA TGAGCCCTGA
  ACCGCCTCCT GGAGGCCGCG GGAAGGAGCT GCCGGCAAAC TCCAAGCACC GTCAGCCTGG
  TGAGTTAACT CTACCGTGTG TGGACCAAGT ATCCGCCAGG TATCTGGCCA AGAGTAAGAT
  GTGCTGTCCT CTGGTGAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss367672431	MGP_WTSI_6_23199694	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs249897289					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367672431	MGP_WTSI_6_23199694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23249693 () rs orientation: forward

Symbol	Name	Function Class
C130093G08Rik	RIKEN cDNA C130093G08 gene	1439 bp upstream
Cpgi17197	CpG island 17197	within coordinates
Fezf1	Fez family zinc finger 1	Intron
Gm56925	predicted gene, 56925	within coordinates
Rr627164	regulatory region 627164	1146 bp distal
Rr627165	regulatory region 627165	23 bp distal
Rr627166	regulatory region 627166	within coordinates
Rr627167	regulatory region 627167	59 bp proximal
Rr627168	regulatory region 627168	1592 bp proximal
Tssr55159	transcription start site region 55159	1146 bp downstream
Tssr55160	transcription start site region 55160	1066 bp downstream
Tssr55161	transcription start site region 55161	916 bp downstream
Tssr55162	transcription start site region 55162	857 bp downstream
Tssr55163	transcription start site region 55163	1464 bp upstream
Tssr59962	transcription start site region 59962	1304 bp upstream