rs248961722 SNP Detail

Summary

• ID
  rs248961722
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135583656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGATGT GAGCCGCCGC
  CGGAGCTGCG GACGGTTTGC CCGAGCCCGT TAGCGCCGCC GGCCCAGAGT CCCGCCGCCA
  CCATGTCCCG ATACCTGCGC CCCCCTAACA CGTCTCTGTT CGTCAGGAAC GTGGCGGACG
  ACACCAGGTG AGCGCACCGG AGCAGCTACT GCGCGGGGGA GGGAGGCCGC GGGCGCCCGG
  S
  GAGCGGCGGC CGTGGCGCGG GGGAGGGGCG GGGCGAAGAT GGCGGGGCCC GCGCCGGCTC
  TAGGCCGCGC CGCCGGCCTG CAGGAGCAAG GGCGGACACC GGGCCGAGCG CTGGCGAGCG
  AGCAGGCGTG AGGGCCGCGT GGCGGGCATT CGGGGGCCCC GTCCTCCCCC GCGTGCTCGG
  CGGCTGGGCC GAGCCGGCGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363377218	MGP_WTSI_4_135412260	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	C	G	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	G	C	G	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248961722					SNP	G	G	C	G	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	G	C	G	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363377218	MGP_WTSI_4_135412260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135583656 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15082	CpG island 15082			within coordinates
Gm57106	predicted gene, 57106			422 bp upstream
Gm69173	predicted gene, 69173			within coordinates
Rr367748	regulatory region 367748			585 bp downstream
Rr398596	regulatory region 398596			219 bp downstream
Rr602160	regulatory region 602160			1169 bp distal
Rr602161	regulatory region 602161			588 bp distal
Rr602162	regulatory region 602162			433 bp distal
Rr602163	regulatory region 602163			within coordinates
Srsf10	serine and arginine-rich splicing factor 10			Intron
				Noncoding-Transcript-Variant
Tssr39638	transcription start site region 39638			601 bp downstream
Tssr39639	transcription start site region 39639			221 bp downstream
Tssr39640	transcription start site region 39640			185 bp downstream
Tssr39641	transcription start site region 39641			94 bp downstream
Tssr39642	transcription start site region 39642			291 bp upstream
Tssr39643	transcription start site region 39643			1541 bp upstream
Tssr43999	transcription start site region 43999			448 bp upstream