rs248645960 SNP Detail

Summary

• ID
  rs248645960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95789926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGTGAT TGGCTGGAAG
  GGAAGCAGTC CATGCTCCGC CCGTACATGC GGCTCCTCGG GTGATAAAAA AGGAGGATGG
  AAAAAAGTGA AAATTAAGGA AGGGGCGGAA AAGGGTGGAG CTCATAGCCT TAAATAGGAC
  AGCACTGCGC GGGAGACGCA CGGCTGGAGT GTACAGAGCG GGGCCGAGCC ACGGAGGTGG
  Y
  GCCTCGGGAC GTGGGCCCCT CTGAGCGCCT CCGCGCACGG GCGCAGCACG TGGGAGCCCT
  CAGCAACTCG TGTCCGCAAC GTGTGTGACA ACGGACGTGT GACGCCGGGC ATCCGTTCCC
  TTGTCGGCGG CTCGCCCTCG TGACTCCCCA CTCTTTCATC CTCCCCTCCT CGCCACCAAG
  TTGGGTGCCT CCTGCCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358909491	MGP_WTSI_3_95686537	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248645960					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358909491	MGP_WTSI_3_95686537	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95789926 () rs orientation: forward

Symbol	Name	Function Class
BC028528	cDNA sequence BC028528	Intron
C920021L13Rik	RIKEN cDNA C920021L13 gene	within coordinates
Ciart	circadian associated repressor of transcription	mRNA-UTR
Cpgi13525	CpG island 13525	within coordinates
Rr581069	regulatory region 581069	420 bp distal
Rr581070	regulatory region 581070	within coordinates
Rr581071	regulatory region 581071	161 bp proximal
Rr581072	regulatory region 581072	629 bp proximal
Rr581073	regulatory region 581073	1623 bp proximal
Tssr30650	transcription start site region 30650	39 bp downstream
Tssr30651	transcription start site region 30651	113 bp upstream
Tssr30652	transcription start site region 30652	139 bp upstream
Tssr34553	transcription start site region 34553	567 bp upstream
Tssr34554	transcription start site region 34554	424 bp upstream
Tssr34555	transcription start site region 34555	383 bp upstream
Tssr34556	transcription start site region 34556	370 bp upstream