rs245599920 SNP Detail

Summary

• ID
  rs245599920
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156285241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAAACAA TTATATTCTG
  TTCTCATACT GTGACTATTC TGTCTCTGGA AGACCCTATC AAGGAATGGA GTAAAGTCAA
  CTAAAATGAA ACCCATCTGC CTCTGTCCCA AATTGGACTC ACCATTGCTG CAGGCTCTAG
  CTCTAGGTCC CCTGGAATTA AGGAGTCTGC TTCTGGCTGC TTGCTCTCAC AGTCAGAGAC
  K
  GGATCGACTC TCAGAGTCAG AGACTGGGTC GACTCTTTTA AGTATGAGCT GTGGGTGTGA
  AGAGGCGGAG TTTCCAGAAA CCAGAGCTAT TTTCTGTTTC GGTTTCCTTT TCCTACGGCA
  TACCTTAAAT GAGTGGGAAA ACCAAAACTG AATGAAAAGA AACTGTAGTT GGGAAGGAAA
  GGGACTGGCT CTCAAGGGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445956	CHEV_4_155574893	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245599920					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156285241 () rs orientation: forward

Symbol	Name	Function Class
Gm46878	predicted gene, 46878	1263 bp downstream
Isg15	ISG15 ubiquitin-like modifier	mRNA-UTR
Rr606695	regulatory region 606695	within coordinates
Rr606696	regulatory region 606696	2 bp proximal
Rr606697	regulatory region 606697	1905 bp proximal
Rr606698	regulatory region 606698	1925 bp proximal
Tssr40794	transcription start site region 40794	1243 bp downstream
Tssr45015	transcription start site region 45015	1181 bp upstream
Tssr45016	transcription start site region 45016	1118 bp upstream
Tssr45017	transcription start site region 45017	1048 bp upstream
Tssr45018	transcription start site region 45018	747 bp upstream
Tssr45019	transcription start site region 45019	7 bp downstream
Tssr45020	transcription start site region 45020	40 bp downstream
Tssr45021	transcription start site region 45021	53 bp downstream