rs243745674 SNP Detail

Summary

• ID
  rs243745674
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:75457140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGCACC TTGTGAACAG
  CCTCTGGAGC GCAGGTATCA GGCACTGCCG GCCCTCGTCT GCATCATGTG CTGTTTGTTT
  GGAGTCGTCT ACTGCTTCTT TGGTGAGATC CCCCTCGTTC CTCACCTGTG GCCTTCTACT
  GTTTCCCTAA AGTTCCTTTT TCTGGTGTCT CGAGAATCAT TTCCACCCCA TCCCACCCCC
  M
  CCCCCACCCC ACCCTCATGG CGGTATCATT CTCTTGCTGA TCACAAGTAT ATTTGTAGAT
  CATTGACTCT AGATTCTACA GAGAGCAGGT TTTGAATTAG GCTCTTTGAG TTTGAACCGG
  GCTCTGTATG TTAGTCACTG TGATGTAATG GGCATGTTAA CCTGGGTCTC AGCTTTTTCA
  CTTGGACAAA GACAACAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
ss350142750	MGP_WTSI_1_75477071	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
rs243745674					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350142750	MGP_WTSI_1_75477071	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75457140 () rs orientation: forward

Symbol	Name	Function Class
Chpf	chondroitin polymerizing factor	1189 bp upstream
Rr413451	regulatory region 413451	1779 bp distal
Rr413452	regulatory region 413452	906 bp distal
Rr413453	regulatory region 413453	784 bp distal
Tmem198	transmembrane protein 198	Intron
Tssr7538	transcription start site region 7538	979 bp downstream
Tssr7539	transcription start site region 7539	903 bp downstream
Tssr12402	transcription start site region 12402	1372 bp upstream
Tssr12403	transcription start site region 12403	1354 bp upstream
Tssr12404	transcription start site region 12404	1337 bp upstream
Tssr12405	transcription start site region 12405	1328 bp upstream
Tssr12406	transcription start site region 12406	1138 bp upstream
Tssr12407	transcription start site region 12407	1092 bp upstream