rs240395442 SNP Detail

Summary

• ID
  rs240395442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156286397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tatagccct ggttgtcctt ctggctgtaa
  ctcacactgt agaccaggct ggcctcaaac tcagaaatct gcctgcctct gcctcccaag
  agctggaatt aaaggtatgt gccaccactg cctggctTAG ATTTTTTTTT TTAAGGTTTA
  R
  TTTTAATTAT GTGGATACAG TGTATTTGGG GGGGGGGGAT TGTGTATATG TGAGTGCAGG
  AAATTAGAAA TTTAGAAGAA GGAACTGAAT ATATAAATTT TCTTTCTTTC TTTATTTTGC
  TTATAtgcat gcatatgtgt gcttatacat                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445961	CHEV_4_155576049	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240395442					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156286397 () rs orientation: forward

Symbol	Name	Function Class
AW011738	expressed sequence AW011738	1344 bp upstream
Cpgi15503	CpG island 15503	843 bp proximal
Isg15	ISG15 ubiquitin-like modifier	1144 bp upstream
Rr398932	regulatory region 398932	1059 bp upstream
Rr606695	regulatory region 606695	1155 bp distal
Rr606696	regulatory region 606696	870 bp distal
Rr606697	regulatory region 606697	749 bp proximal
Rr606698	regulatory region 606698	769 bp proximal
Rr606699	regulatory region 606699	1375 bp proximal
Rr606700	regulatory region 606700	1843 bp proximal
Tssr40795	transcription start site region 40795	1352 bp upstream
Tssr45018	transcription start site region 45018	1903 bp upstream
Tssr45019	transcription start site region 45019	1135 bp upstream
Tssr45020	transcription start site region 45020	1107 bp upstream
Tssr45021	transcription start site region 45021	1094 bp upstream