rs238473200 SNP Detail

Summary

• ID
  rs238473200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144370176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAT GTGTTCGAAT CCAGGATTGC
  Y
  CGGTTGCCAA GGGAAGTTCT ATAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320536506	CHEV_2_144353992	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238473200					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144370176 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dzank1	double zinc ribbon and ankyrin repeat domains 1			842 bp upstream
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F			Intron
				Noncoding-Transcript-Variant
Rr566472	regulatory region 566472			869 bp distal
Rr566473	regulatory region 566473			498 bp distal
Rr566474	regulatory region 566474			within coordinates
Tssr20540	transcription start site region 20540			729 bp downstream
Tssr20541	transcription start site region 20541			483 bp downstream
Tssr20542	transcription start site region 20542			454 bp downstream
Tssr26607	transcription start site region 26607			832 bp upstream
Tssr26608	transcription start site region 26608			824 bp upstream
Tssr26609	transcription start site region 26609			806 bp upstream
Tssr26610	transcription start site region 26610			744 bp upstream
Tssr26611	transcription start site region 26611			719 bp upstream