rs236717891 SNP Detail

Summary

• ID
  rs236717891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135582780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGAGGG AGAAGAGAGG
  AGAAAAAAGG AGAGGGAGAA AAGCAAACCA GCTAGCCAAG GTTTTTTTGT AGCTGGGGAG
  TCCCATGATG AGGACTGAAA GTTGGAGGGG GACTGGAGCA AGAGGGGGAC GATGGGCCGG
  GGTGAGTGGG CAGTGTCTGT CTTAGGGTGC AGGCAGGTCT GTGGGAAGAA ACTTGGCTAG
  Y
  AAATCCAAGG ACCTAGATTG GATCCCCAGA AAACAACAAA GAGACAAACA CCACCTCTTC
  AAGGCTGGAA AAGGGGTTCA GGCACCTTGC ATGTGAGCAA CAGAGACAAG GACAGCAGGG
  CCCGGGTCTC ACGGGGAGGG AATTGCGTGC CTAGGTGACG CGGATGTGCA GCAAAGGCAG
  AGAGTTGCAC GCACGGCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363377206	MGP_WTSI_4_135411384	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236717891					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363377206	MGP_WTSI_4_135411384	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135582780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15082	CpG island 15082	within coordinates
Gm13000	predicted gene 13000	1296 bp downstream
Gm57106	predicted gene, 57106	within coordinates
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	108 bp upstream
Rr398596	regulatory region 398596	356 bp upstream
Rr602159	regulatory region 602159	1226 bp distal
Rr602160	regulatory region 602160	293 bp distal
Rr602161	regulatory region 602161	within coordinates
Rr602162	regulatory region 602162	289 bp proximal
Rr602163	regulatory region 602163	444 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	mRNA-UTR
Tssr39638	transcription start site region 39638	238 bp upstream
Tssr39639	transcription start site region 39639	618 bp upstream
Tssr39640	transcription start site region 39640	659 bp upstream
Tssr39641	transcription start site region 39641	773 bp upstream
Tssr39642	transcription start site region 39642	1167 bp upstream
Tssr43999	transcription start site region 43999	400 bp downstream