rs231604709 SNP Detail

Summary

• ID
  rs231604709
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156287033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGGTGTG TGTGTGTGTG
  TGTTTTGAGA CAGGGTCTCA CTATGTAACC CTGGCTGTGC TGGGACTTAC TCTGTAGACC
  AGGCAGGCCT CGAACTCACG GAGCTCTTTC TGTCTCTGCC TCTTGAATGC TACATTAAAG
  GCACGTGCGG CTGTGCCTCA CTTGCCCTAA GTTTTTGAGT TCTTCTTGGC TGAACTTAGC
  S
  GTGGGGTAAT TCAGGATACA TCACTGGCAC CATGACATCA TCCCATCTGG TTTCTGTCAC
  CACTGATATC CTTATCCTTA CACTGCACGA AGTCGTCCTT CCGCTGCCCT GTGATATCAG
  TTGATGTCAC TTATCAGGTG ACCAGGACCA GTTGACCCCT CTCTAGTCTC GGTGTCTGGT
  GTTGGTTCAT CTTTCTACCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445964	CHEV_4_155576685	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231604709					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156287033 () rs orientation: forward

Symbol	Name	Function Class
AW011738	expressed sequence AW011738	708 bp upstream
Cpgi15503	CpG island 15503	207 bp proximal
Isg15	ISG15 ubiquitin-like modifier	1780 bp upstream
Rr398932	regulatory region 398932	423 bp upstream
Rr606695	regulatory region 606695	1791 bp distal
Rr606696	regulatory region 606696	1506 bp distal
Rr606697	regulatory region 606697	113 bp proximal
Rr606698	regulatory region 606698	133 bp proximal
Rr606699	regulatory region 606699	739 bp proximal
Rr606700	regulatory region 606700	1207 bp proximal
Tssr40795	transcription start site region 40795	716 bp upstream
Tssr45019	transcription start site region 45019	1771 bp upstream
Tssr45020	transcription start site region 45020	1743 bp upstream
Tssr45021	transcription start site region 45021	1730 bp upstream