rs231402030 SNP Detail

Summary

• ID
  rs231402030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146679113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAATCAAAG CACGCAACTC GGGCTCCGGA
  GGAAGAAAAG GTCCCTCTAG ATCGCTTACC CACAAGTCTA GCGCACAATG CGGCCGATTG
  CATCACCGAT TTGGATGCTA TTCTGCAGAT CTCCGACATC ATCAAACTGA AGTGATCTTG
  R
  GAATAAGAGA ATAAAACTGA CTCTCTTTTC GAAACTTTAG GAATCCTTAG TATCTTGGCC
  GCATTGTTGA GCCAACAGAT AACCAAGATA GTAAAACCCA GTTTGGCCAT GCTCCCACCT
  CCTTATCCCA AGTTAATATT GAGAACACAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320546132	CHEV_2_146662929	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231402030					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146679113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12369	CpG island 12369	1809 bp distal
Cpgi12370	CpG island 12370	647 bp distal
Cpgi12371	CpG island 12371	33 bp distal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	1119 bp upstream
Gm57437	predicted gene, 57437	within coordinates
Rr566734	regulatory region 566734	1817 bp distal
Rr566735	regulatory region 566735	1029 bp proximal
Rr566736	regulatory region 566736	1603 bp proximal
Tssr20612	transcription start site region 20612	1795 bp upstream