rs231163029 SNP Detail

Summary

• ID
  rs231163029
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135582177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGCGGG CAGTACTTTC
  CTGAAGGCCT TCGGTACAGC CTCCTTCACA CCACTCCTTT GGCAGAGCTG CTGTTTGGTA
  AATTGCACAA CGTGCCCAAA AGCCTGGTGG TCAAGGGGTG TTGGACTTCT TGCTTTTCTT
  CTTGGTCATA CTCTCATTCT CTCCGCAGTC CTCATGTTTA CCAGAGACTG TGTGATGTAT
  K
  TGAGGGAAGT GATGTGTGCA TCTTCTCACT CATAAGTTTG AACTCCGTAG ATATTAACGC
  ATATAAGCCA TATTTAAAAA CAGGGCGCTG GGCAGTGGTG GCGCACGCCT TTGATCCCAG
  CACTTGGGAG GCACAGGCAG GTGGATTTCT GAGTTCGAGG CCAGCCTGGT CTACAAAGTG
  AGTTCCAGGA CAGCCAGGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363377197	MGP_WTSI_4_135410781	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231163029					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363377197	MGP_WTSI_4_135410781	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135582177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15082	CpG island 15082	568 bp proximal
Gm13000	predicted gene 13000	693 bp downstream
Gm57106	predicted gene, 57106	268 bp downstream
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	711 bp upstream
Rr398596	regulatory region 398596	959 bp upstream
Rr602159	regulatory region 602159	623 bp distal
Rr602160	regulatory region 602160	289 bp proximal
Rr602161	regulatory region 602161	391 bp proximal
Rr602162	regulatory region 602162	892 bp proximal
Rr602163	regulatory region 602163	1047 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	881 bp upstream
Tssr39638	transcription start site region 39638	841 bp upstream
Tssr39639	transcription start site region 39639	1221 bp upstream
Tssr39640	transcription start site region 39640	1262 bp upstream
Tssr39641	transcription start site region 39641	1376 bp upstream
Tssr39642	transcription start site region 39642	1770 bp upstream
Tssr43999	transcription start site region 43999	1003 bp downstream