rs228221012 SNP Detail

Summary

• ID
  rs228221012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95791228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAGTTGA TATCTAATTC
  CTTCCCCACC CCACCCCCCA AGACAGGGTT TCTCCGTGTA GCTCTGGCTG CCCTGGAATT
  CACTTTGTAG ACCAGGCTTG CCCTCAAACT CAAAGATCTG CCTGCTTCTG GTTCCCTGCC
  TTGTAATTCT CTTTCTAATC TGCCCTTCAT GCCGCTAAAT CTTGGTGTAC GTGTCAGTGT
  Y
  GACTTTAGAA CAGACTCTCA TTAAGAAGTA GGCAAAATTA ATTTTTTAAT TTTTTTCTTA
  AAAGAATTAT TTATTGTATA TATATATATA TGTGTACACT GTAGCTGTCT TCAGACACTC
  CAGAAGAGGG CATGAGATCC CATTACAGAT GGTTGTGAGC CACCATGTGG TTGCTGGGAA
  TTGAACTCAG GACCTCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358909510	MGP_WTSI_3_95687839	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228221012					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358909510	MGP_WTSI_3_95687839	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95791228 () rs orientation: forward

Symbol	Name	Function Class
BC028528	cDNA sequence BC028528	Intron
C920021L13Rik	RIKEN cDNA C920021L13 gene	within coordinates
Ciart	circadian associated repressor of transcription	1665 bp upstream
Cpgi13525	CpG island 13525	922 bp distal
Rr581069	regulatory region 581069	1722 bp distal
Rr581070	regulatory region 581070	1142 bp distal
Rr581071	regulatory region 581071	506 bp distal
Rr581072	regulatory region 581072	652 bp distal
Rr581073	regulatory region 581073	321 bp proximal
Tssr30650	transcription start site region 30650	1341 bp downstream
Tssr30651	transcription start site region 30651	1176 bp downstream
Tssr30652	transcription start site region 30652	1139 bp downstream
Tssr34553	transcription start site region 34553	1869 bp upstream
Tssr34554	transcription start site region 34554	1726 bp upstream
Tssr34555	transcription start site region 34555	1685 bp upstream
Tssr34556	transcription start site region 34556	1672 bp upstream