rs226957597 SNP Detail

Summary

• ID
  rs226957597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135583992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCCGAGCC GGCGGGCCGG ACGTGTGTGT
  CCCTCATGGA TCCGACGTCC ACGTTCCATG AGGTGCACGC CCCCCTCGGC CTGAAAGGGA
  TTTTTGTTGT TGAAAACGGG AAAAGGGTTg ccaggcgggg cggcccaggc cagcactcgg
  R
  gaagccgagg cgggaggatc ggcgcgagtc ggaggtcagc tcgggctacg aagtcagaAG
  ATGGAAAAGA TGCGAGTGGG ATAACGGGAT AGCGGAGGGG AGGGTTTGCA GCTCCATCTC
  CCCCATCTGT GTGGATGGTG ATGAGTGGAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353317	CHEV_4_135412596	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226957597					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135583992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15082	CpG island 15082			within coordinates
Gm57106	predicted gene, 57106			758 bp upstream
Gm69173	predicted gene, 69173			308 bp upstream
Rr367748	regulatory region 367748			921 bp downstream
Rr398596	regulatory region 398596			555 bp downstream
Rr602160	regulatory region 602160			1505 bp distal
Rr602161	regulatory region 602161			924 bp distal
Rr602162	regulatory region 602162			769 bp distal
Rr602163	regulatory region 602163			within coordinates
Srsf10	serine and arginine-rich splicing factor 10			Intron
				Noncoding-Transcript-Variant
Tssr39638	transcription start site region 39638			937 bp downstream
Tssr39639	transcription start site region 39639			557 bp downstream
Tssr39640	transcription start site region 39640			521 bp downstream
Tssr39641	transcription start site region 39641			430 bp downstream
Tssr39642	transcription start site region 39642			1 bp downstream
Tssr39643	transcription start site region 39643			1205 bp upstream
Tssr43999	transcription start site region 43999			784 bp upstream