rs225175162 SNP Detail

Summary

• ID
  rs225175162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:75455425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGGGATCC AGAAAAAGCT
  TCAAACTGGC CCTCTGTCTC CCTGCAAGCA GGGTCATAGG AAGTAATCGA GGCCCAAGGA
  CTTCCTGGCC GGCCGGCCCC TTCCTTCCGG AGCCTGACCC GGCCTCTGGC GGCCTCCCTA
  GCGCGCGCAT CCTGGCTGGT GCCTGCGGGG GGGGGGGGGG GGGTGTTAGG GCGGACGGAG
  Y
  GGATCAGTAC CTGACGGCCT TCTTGGTGGC CTGGCCTGGC TGCGCGGGAT GGTAGGGCAA
  GACACGAGGC TCCCAGCTCT CACCGGTGCC TGCGCCGGCC CCGGGCCTCT CGCGCTCGGA
  TCCGGGCTGC ACCGAGTTGG GCCGGCGCGC CGCGTTGGTG TTGCCGCGCG GCGGCAGCTC
  AGAGTCTCCG GGTTGGGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss350142732	MGP_WTSI_1_75475356	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs225175162					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350142732	MGP_WTSI_1_75475356	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75455425 () rs orientation: forward

Symbol	Name	Function Class
Chpf	chondroitin polymerizing factor	Intron
Rr413448	regulatory region 413448	1421 bp distal
Rr413449	regulatory region 413449	1187 bp distal
Rr413450	regulatory region 413450	730 bp distal
Rr413451	regulatory region 413451	64 bp distal
Rr413452	regulatory region 413452	480 bp proximal
Rr413453	regulatory region 413453	910 bp proximal
Tmem198	transmembrane protein 198	751 bp upstream
Tssr7538	transcription start site region 7538	725 bp upstream
Tssr7539	transcription start site region 7539	748 bp upstream
Tssr12402	transcription start site region 12402	322 bp downstream
Tssr12403	transcription start site region 12403	344 bp downstream
Tssr12404	transcription start site region 12404	367 bp downstream
Tssr12405	transcription start site region 12405	380 bp downstream
Tssr12406	transcription start site region 12406	503 bp downstream
Tssr12407	transcription start site region 12407	608 bp downstream