rs223244780 SNP Detail

Summary

• ID
  rs223244780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70699146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTTATTA TTAACTAAGA
  GATGCTAGTG AGTTCTAAAT TAATACCATT TAAAATTTAT AATTTGCAGA ATTACCACCA
  CCACCACCAC TCAGCCCAGG AAAAGTTACA AAGAACTGGC TATCCAATTT GTTTGTTTTC
  CTCCTTTTTA GAGTTCTTTT ATTTATGTGT GAGTGAATGC CATGTACTTA TGGATGCAGA
  R
  GCTGTCAGAT TCCTTGCAGC TGGAGTAATA GACAGTTGTG AGCTACTTAT AGTACTAGAA
  CTAAGATCCT ATGGAAGAGC AGCGAGTGCC ACTAACTGCT GAGCCACCTC TCCAGCCCAT
  TTCTTTATTT TTCAATGAAC AAATAATAAG CAGTCCTATG TGACATGCTT CTAAAGCAAA
  AGATATAATA TTTAGTATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368707515	MGP_WTSI_6_70672156	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	A	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223244780					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	A	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368707515	MGP_WTSI_6_70672156	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70699146 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Igkj1	immunoglobulin kappa joining 1	400 bp upstream
Igkj2	immunoglobulin kappa joining 2	754 bp upstream
Igkj3	immunoglobulin kappa joining 3	1061 bp upstream
Igkj4	immunoglobulin kappa joining 4	1386 bp upstream
Igkj5	immunoglobulin kappa joining 5	1724 bp upstream
Rr163	regulatory region 163	291 bp proximal
Rr164	regulatory region 164	within coordinates
Rr165	regulatory region 165	within coordinates
Tssr56949	transcription start site region 56949	446 bp downstream
Tssr56950	transcription start site region 56950	329 bp upstream
Tssr56951	transcription start site region 56951	387 bp upstream
Tssr56952	transcription start site region 56952	676 bp upstream
Tssr56953	transcription start site region 56953	1376 bp upstream
Tssr56954	transcription start site region 56954	1498 bp upstream
Tssr56955	transcription start site region 56955	1712 bp upstream