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Igkj5 Gene Detail
Summary
  • Symbol
    Igkj5
  • Name
    immunoglobulin kappa joining 5
Location &
Maps
more
  • Sequence Map
    Chr6:70700870-70700907 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 32.04 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    99 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1316738
 gene segment Chr6:70700870-70700911 (+)
129S1/SvImJ ENSMUSG00200012177
 gene segment Chr6:67603929-67603970 (+)
A/J ENSMUSG00195044027
 gene segment Chr6:67365904-67365945 (+)
AKR/J ENSMUSG00220045989
 gene segment Chr6:66314536-66314577 (+)
BALB/cJ ENSMUSG00180041963
 gene segment Chr6:67720974-67721015 (+)
C3H/HeJ ENSMUSG00175014784
 gene segment Chr6:109731975-109732016 (-)
C57BL/6NJ ENSMUSG00215044837
 gene segment Chr6:67693614-67693655 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0000028
 gene segment Chr6:67617071-67617112 (+)
CAST/EiJ ENSTCUG00005035857
 gene segment Chr6:67846890-67846931 (+)
CBA/J ENSMUSG00210047322
 gene segment Chr6:67518769-67518810 (+)
DBA/2J ENSMUSG00185043881
 gene segment Chr6:68078805-68078846 (+)
FVB/NJ ENSMUSG00205041869
 gene segment Chr6:66816445-66816486 (+)
JF1/MsJ ENSUMUG00000039663
 gene segment Chr6:67113447-67113488 (+)
LP/J ENSMUSG00230025071
 gene segment Chr6:69199026-69199067 (+)
NOD/ShiLtJ ENSMUSG00190037776
 gene segment Chr6:67053875-67053916 (+)
NZO/HlLtJ ENSMUSG00225020106
 gene segment Chr6:71172924-71172965 (+)
PWK/PhJ ENSLUMG00010020717
 gene segment Chr6:66485823-66485864 (+)
SPRET/EiJ ENSMSPG00010029326
 gene segment Chr6:68400123-68400164 (+)
WSB/EiJ ENSIUOG00005023549
 gene segment Chr6:68071196-68071237 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 110763 NCBI Gene Model | MGI Sequence Detail 38 C57BL/6J ±  kb
polypeptide A0A0G2JDI1 UniProt | EBI | MGI Sequence Detail 13 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 9
    Genomic 9
References
more
  • Summaries
    All 16
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:32390 Sakano H, et al., Sequences at the somatic recombination sites of immunoglobulin light-chain genes. Nature. 1979 Jul 26;280(5720):288-94
  • Latest
    J:302182 Le Noir S, et al., IgH 3' regulatory region increases ectopic class switch recombination. PLoS Genet. 2021 Feb;17(2):e1009288
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory