rs221140843 SNP Detail

Summary

• ID
  rs221140843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135581727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGCTCA TCTACGTGGT
  TGAATCTTCC TGGGTTGCTA CTGAAATTAC AGTGCCTTTC TTAAGAAATG TTCATTTATT
  GGGTTACATC GATCTGCCAG CCAGTCGGGT ATTTCTAATC CTCCCTGCGC TTTTAAACAG
  AAAGAGAGAA ATGTGAGCAT GTGTGTGTGG GTATGGGTGT GCCGGTGCCC GCAGAAGTCA
  R
  AAGAGGGTGC TGGATCCCCT AGAGATGGAG TTGCAGGCGG CTGTGAGCCA CCTACATTGG
  AACTGAACTC AGGTCCGTGC TCTGGAAGAG CAGCGCGTGC TCTTAACCGC TGAGCCACCT
  CTCTAGTCGC TTTCGAACAA AAAGATTTGC AGCAACTTAT TCCCCCACCC AGATGACCAA
  ATTATAATTT AAATCAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363377191	MGP_WTSI_4_135410331	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221140843					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363377191	MGP_WTSI_4_135410331	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135581727 () rs orientation: forward

Symbol	Name	Function Class
Gm13000	predicted gene 13000	243 bp downstream
Gm57106	predicted gene, 57106	718 bp downstream
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	1161 bp upstream
Rr398596	regulatory region 398596	1409 bp upstream
Rr602158	regulatory region 602158	1628 bp distal
Rr602159	regulatory region 602159	173 bp distal
Rr602160	regulatory region 602160	739 bp proximal
Rr602161	regulatory region 602161	841 bp proximal
Rr602162	regulatory region 602162	1342 bp proximal
Rr602163	regulatory region 602163	1497 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	1331 bp upstream
Tssr39638	transcription start site region 39638	1291 bp upstream
Tssr39639	transcription start site region 39639	1671 bp upstream
Tssr39640	transcription start site region 39640	1712 bp upstream
Tssr39641	transcription start site region 39641	1826 bp upstream
Tssr43999	transcription start site region 43999	1453 bp downstream