rs218150430 SNP Detail

Summary

• ID
  rs218150430
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156286028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAACAAGC ACCAAGACTC
  TGTCTTGAAA AGCCAAGAGA ACAAACAAAG TATTGCTCAC ATCAAGATAC ATTGAGTCAG
  ATGAGTTTGT TTTTGAAGTA GTCTTTGCTA TGTAGTCCAT GCTGGCTTCA AACTCACTTT
  AAAATTGGCC TTAAACTGGT CCTTCTGTTT CTCCTGCTCA TGTTCTGAGA TTTTAGTGAT
  K
  CATCTTCTGT GCCATTTTCT GCAGTTCTGG GAACAGAACC CAGAGCTTCA TGCATGCTAA
  GTAAGTACTC TAACAATTGA GTTATATACT TAGTACTCAG TTTTGGTTTT TTTTTTGTTT
  GTTTGTTTTT GTTTTTTTGG TTTGTTTTTG TTTTTGTTTT TTTTTTTTTG TTTTTTTTTT
  GTTTGTTTGT TTTTTGTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445960	CHEV_4_155575680	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218150430					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156286028 () rs orientation: forward

Symbol	Name	Function Class
AW011738	expressed sequence AW011738	1713 bp upstream
Cpgi15503	CpG island 15503	1212 bp proximal
Isg15	ISG15 ubiquitin-like modifier	775 bp upstream
Rr398932	regulatory region 398932	1428 bp upstream
Rr606695	regulatory region 606695	786 bp distal
Rr606696	regulatory region 606696	501 bp distal
Rr606697	regulatory region 606697	1118 bp proximal
Rr606698	regulatory region 606698	1138 bp proximal
Rr606699	regulatory region 606699	1744 bp proximal
Tssr40795	transcription start site region 40795	1721 bp upstream
Tssr45015	transcription start site region 45015	1968 bp upstream
Tssr45016	transcription start site region 45016	1905 bp upstream
Tssr45017	transcription start site region 45017	1835 bp upstream
Tssr45018	transcription start site region 45018	1534 bp upstream
Tssr45019	transcription start site region 45019	766 bp upstream
Tssr45020	transcription start site region 45020	738 bp upstream
Tssr45021	transcription start site region 45021	725 bp upstream