rs216908987 SNP Detail

Summary

• ID
  rs216908987
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:75455408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCAGCTC AGATCCGGAC
  GGGATCCAGA AAAAGCTTCA AACTGGCCCT CTGTCTCCCT GCAAGCAGGG TCATAGGAAG
  TAATCGAGGC CCAAGGACTT CCTGGCCGGC CGGCCCCTTC CTTCCGGAGC CTGACCCGGC
  CTCTGGCGGC CTCCCTAGCG CGCGCATCCT GGCTGGTGCC TGCGGGGGGG GGGGGGGGGG
  K
  GTTAGGGCGG ACGGAGTGGA TCAGTACCTG ACGGCCTTCT TGGTGGCCTG GCCTGGCTGC
  GCGGGATGGT AGGGCAAGAC ACGAGGCTCC CAGCTCTCAC CGGTGCCTGC GCCGGCCCCG
  GGCCTCTCGC GCTCGGATCC GGGCTGCACC GAGTTGGGCC GGCGCGCCGC GTTGGTGTTG
  CCGCGCGGCG GCAGCTCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss350142731	MGP_WTSI_1_75475339	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs216908987					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350142731	MGP_WTSI_1_75475339	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75455408 () rs orientation: forward

Symbol	Name	Function Class
Chpf	chondroitin polymerizing factor	Intron
Rr413448	regulatory region 413448	1404 bp distal
Rr413449	regulatory region 413449	1170 bp distal
Rr413450	regulatory region 413450	713 bp distal
Rr413451	regulatory region 413451	47 bp distal
Rr413452	regulatory region 413452	497 bp proximal
Rr413453	regulatory region 413453	927 bp proximal
Tmem198	transmembrane protein 198	768 bp upstream
Tssr7538	transcription start site region 7538	742 bp upstream
Tssr7539	transcription start site region 7539	765 bp upstream
Tssr12402	transcription start site region 12402	339 bp downstream
Tssr12403	transcription start site region 12403	361 bp downstream
Tssr12404	transcription start site region 12404	384 bp downstream
Tssr12405	transcription start site region 12405	397 bp downstream
Tssr12406	transcription start site region 12406	520 bp downstream
Tssr12407	transcription start site region 12407	625 bp downstream