rs216109544 SNP Detail

Summary

• ID
  rs216109544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156286868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAGGCC ACCTCCATTG
  AATGGAGGCA GCTGCCAGGC TACGCTGTGC TTAGTAACCT GAGTACAAAA TGTCTGTATG
  TATAGCAGTG TAACTCAGAA TGAAAACAAT AGCAACCATT AAAATAATAA TGGCCCTGTT
  TTTCTTATTT TCCTTTGGAA AAAAAATTTG GTGTGTGTGT GTGTGTGTTT TGAGACAGGG
  Y
  CTCACTATGT AACCCTGGCT GTGCTGGGAC TTACTCTGTA GACCAGGCAG GCCTCGAACT
  CACGGAGCTC TTTCTGTCTC TGCCTCTTGA ATGCTACATT AAAGGCACGT GCGGCTGTGC
  CTCACTTGCC CTAAGTTTTT GAGTTCTTCT TGGCTGAACT TAGCGGTGGG GTAATTCAGG
  ATACATCACT GGCACCATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445963	CHEV_4_155576520	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216109544					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156286868 () rs orientation: forward

Symbol	Name	Function Class
AW011738	expressed sequence AW011738	873 bp upstream
Cpgi15503	CpG island 15503	372 bp proximal
Isg15	ISG15 ubiquitin-like modifier	1615 bp upstream
Rr398932	regulatory region 398932	588 bp upstream
Rr606695	regulatory region 606695	1626 bp distal
Rr606696	regulatory region 606696	1341 bp distal
Rr606697	regulatory region 606697	278 bp proximal
Rr606698	regulatory region 606698	298 bp proximal
Rr606699	regulatory region 606699	904 bp proximal
Rr606700	regulatory region 606700	1372 bp proximal
Tssr40795	transcription start site region 40795	881 bp upstream
Tssr45019	transcription start site region 45019	1606 bp upstream
Tssr45020	transcription start site region 45020	1578 bp upstream
Tssr45021	transcription start site region 45021	1565 bp upstream