rs215425894 SNP Detail

Summary

• ID
  rs215425894
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135582416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTCCGT AGATATTAAC
  GCATATAAGC CATATTTAAA AACAGGGCGC TGGGCAGTGG TGGCGCACGC CTTTGATCCC
  AGCACTTGGG AGGCACAGGC AGGTGGATTT CTGAGTTCGA GGCCAGCCTG GTCTACAAAG
  TGAGTTCCAG GACAGCCAGG GCTGTACAGA GAAACCCTGT CTCGAAAAGC AAGCAAACAA
  A
  CAAACAAACA AAAAACCACA CACACAAAAA CAATAATAAA AATCTAAGTG TATTGCCCAC
  TTGTGTATGG GTGCCCTAGG AGGCCAAAGA GGGAACTAGT AACAAAGCAC TGAGCCCGCT
  CCCTCAACGT GGGGAATAGA GGGGAGGAGG CGCTAGAGAG AGGGAGGGGA GGGAGAAGAG
  AGGAGAAAAA AGGAGAGGGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363377202	MGP_WTSI_4_135411020	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215425894					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363377202	MGP_WTSI_4_135411020	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135582416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15082	CpG island 15082	329 bp proximal
Gm13000	predicted gene 13000	932 bp downstream
Gm57106	predicted gene, 57106	29 bp downstream
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	472 bp upstream
Rr398596	regulatory region 398596	720 bp upstream
Rr602159	regulatory region 602159	862 bp distal
Rr602160	regulatory region 602160	50 bp proximal
Rr602161	regulatory region 602161	152 bp proximal
Rr602162	regulatory region 602162	653 bp proximal
Rr602163	regulatory region 602163	808 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	642 bp upstream
Tssr39638	transcription start site region 39638	602 bp upstream
Tssr39639	transcription start site region 39639	982 bp upstream
Tssr39640	transcription start site region 39640	1023 bp upstream
Tssr39641	transcription start site region 39641	1137 bp upstream
Tssr39642	transcription start site region 39642	1531 bp upstream
Tssr43999	transcription start site region 43999	764 bp downstream