rs214578029 SNP Detail

Summary

• ID
  rs214578029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:75457250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCGTTC CTCACCTGTG
  GCCTTCTACT GTTTCCCTAA AGTTCCTTTT TCTGGTGTCT CGAGAATCAT TTCCACCCCA
  TCCCACCCCC ACCCCCACCC CACCCTCATG GCGGTATCAT TCTCTTGCTG ATCACAAGTA
  TATTTGTAGA TCATTGACTC TAGATTCTAC AGAGAGCAGG TTTTGAATTA GGCTCTTTGA
  R
  TTTGAACCGG GCTCTGTATG TTAGTCACTG TGATGTAATG GGCATGTTAA CCTGGGTCTC
  AGCTTTTTCA CTTGGACAAA GACAACAGTG TTTGTCTCAT ATAGACAAGA ATTAGTAGGT
  GGTCAAAGAA TAATGACTAT CGTAGCGAAG ATATGTTTGG ATCACTTAGG ATAAGCAGAC
  TAAAATAAAA TAATAAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350142751	MGP_WTSI_1_75477181	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214578029					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350142751	MGP_WTSI_1_75477181	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75457250 () rs orientation: forward

Symbol	Name	Function Class
Chpf	chondroitin polymerizing factor	1299 bp upstream
Rr413451	regulatory region 413451	1889 bp distal
Rr413452	regulatory region 413452	1016 bp distal
Rr413453	regulatory region 413453	894 bp distal
Tmem198	transmembrane protein 198	Intron
Tssr7538	transcription start site region 7538	1089 bp downstream
Tssr7539	transcription start site region 7539	1013 bp downstream
Tssr12402	transcription start site region 12402	1482 bp upstream
Tssr12403	transcription start site region 12403	1464 bp upstream
Tssr12404	transcription start site region 12404	1447 bp upstream
Tssr12405	transcription start site region 12405	1438 bp upstream
Tssr12406	transcription start site region 12406	1248 bp upstream
Tssr12407	transcription start site region 12407	1202 bp upstream