rs108822055 SNP Detail

Summary

• ID
  rs108822055
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156285681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAATGGCAT AATAATTCAG AAACTGCATA ACATAGTACC
  AATCAGAATT GCCCAAAGAC AACTGCTATT GGTTATTAGT TTAGAACAAT AGTTTTTTTT
  K
  GGGGGGGAGG GGCTTGTAGG AAGCATTTCT GTCCTAGAAC AGTTTATTAA GACCCTATTG
  TAGCTGGGCC AGGGCGCACA CCTTTGATCC CAGCACCGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148128458	ENSMUSSNP3432105	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321445958	CHEV_4_155575333	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108822055					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156285681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15503	CpG island 15503	1559 bp proximal
Gm46878	predicted gene, 46878	1703 bp downstream
Isg15	ISG15 ubiquitin-like modifier	428 bp upstream
Rr398932	regulatory region 398932	1775 bp upstream
Rr606695	regulatory region 606695	439 bp distal
Rr606696	regulatory region 606696	154 bp distal
Rr606697	regulatory region 606697	1465 bp proximal
Rr606698	regulatory region 606698	1485 bp proximal
Tssr40794	transcription start site region 40794	1683 bp downstream
Tssr45015	transcription start site region 45015	1621 bp upstream
Tssr45016	transcription start site region 45016	1558 bp upstream
Tssr45017	transcription start site region 45017	1488 bp upstream
Tssr45018	transcription start site region 45018	1187 bp upstream
Tssr45019	transcription start site region 45019	419 bp upstream
Tssr45020	transcription start site region 45020	391 bp upstream
Tssr45021	transcription start site region 45021	378 bp upstream