YACPA-2 Probe Detail MGI Mouse MGI:35672

YACPA-2 Probe Detail

Name

YACPA-2
Sequence Type

genomic
ID

MGI:35672
Region Covered

includes Cdx4, DXPas28, DXPas31, DXPas36, DXPas37, Xist, DXPas29, DXPas38, DXPas39, DXPas40, DXPas41, DXPas42, Tsx, DXPas19, DXPas27, DXPas35, DXPas34, DXPas33, DXPas32, DXPas30, Nap1l2, their intergenic regions and a small portion telomeric to DXPas27
Child Clones

1PAS9, 510, A1, A3, DXPas27 genomic, IB6, IB8, IC3, ID2, IG10, IIA12, IIB8, IID1, IIE1, IIH3, IIIA2, IIIA8, IIIB5, IIIC2, IIIC3, IIIC5, IIIF9, IVA4, IVA5, IVA7, IVA9, IVA10, IVC3, IVC5, IVC6, IVE3, IVG9, IVH3, IVH6, lambda-1, lambda-1, PA-2 F1-a, PA-2 F1-b, PA-2 F1-c, PA-2 F1-d, PA-2 F1-e, PA-2 F1-f, PA-2 F1-g, PA-2 F1-h, PA-2 F1-i, PA-2 F1-j, PA-2 F1-k, PA-2 F1-l, PA-2 F1-m, PA-2 F1-n, PA-2 F1-o, PA-2 F1-p, PA-2 F2-a, PA-2 F2-b, PA-2 F2-c, PA-2 F2-d, PA-2 F2-e, PA-2 F2-f, PA-2 F2-g, PA-2 F2-h, PA-2 F2-i, PA-2 F2-j, PA-2 F2-k, PA-2 F2-l, PA-2 F2-m, PA-2 F2-n, PA-2 F8-a, PA-2 F8-b, PA-2 F8-c, PA-2 F8-d, PA-2 F8-e, PA-2 F8-f, PA-2 F8-g, PA-2 F8-h, PA-2 F8-j, PA-2 F8-k, PA-2 F8-l, PA-2 F8-m, PA-2 F8-n, PA-2 F8-o, R1, R2, VB5, VB9, VC4
Vector Type

YAC
Insert Size

460 kb
Synonyms

YAC PA-2

Species

mouse, laboratory
Strain

C3H
Sex

Male

Cdx4	caudal type homeobox 4
DXPas19	DNA segment, Chr X, Pasteur Institute 19
DXPas27	DNA segment, Chr X, Pasteur Institute 27
DXPas28	DNA segment, Chr X, Pasteur Institute 28
DXPas29	DNA segment, Chr X, Pasteur Institute 29
DXPas31	DNA segment, Chr X, Pasteur Institute 31
Xist	inactive X specific transcripts
DXPas36	DNA segment, Chr X, Pastuer Institute 36
DXPas35	DNA segment, Chr X, Pastuer Institute 35
DXPas34	DNA segment, Chr X, Pasteur Institute 34
DXPas33	DNA segment, Chr X, Pastuer Institute 33
DXPas32	DNA segment, Chr X, Pastuer Institute 32
DXPas30	DNA segment, Chr X, Pasteur Institute 30
Nap1l2	nucleosome assembly protein 1-like 2
Tsx	testis specific X-linked gene
DXPas42	DNA segment, Chr X, Pasteur Institute 42
DXPas41	DNA segment, Chr X, Pasteur Institute 41
DXPas40	DNA segment, Chr X, Pasteur Institute 40
DXPas39	DNA segment, Chr X, Pasteur Institute 39
DXPas38	DNA segment, Chr X, Pasteur Institute 38
DXPas37	DNA segment, Chr X, Pasteur Institute 37
Chic1	cysteine-rich hydrophobic domain 1

X99946 (GenBank | EMBL | ENA | DDBJ | MGI Sequence Detail)

J:4231 Heard E, et al., Physical mapping and YAC contig analysis of the region surrounding Xist on the mouse X chromosome. Genomics. 1993 Mar;15(3):559-69

J:14461 Simmler MC, et al., Mapping the murine Xce locus with (CA)n repeats. Mamm Genome. 1993 Sep;4(9):523-30

J:18691 Heard E, et al., Creation of a deletion series of mouse YACs covering a 500 kb region around Xist. Nucleic Acids Res. 1994 May 25;22(10):1830-7

J:19186 Rougeulle C, et al., Generation and characterization of an ordered lambda clone array for the 460-kb region surrounding the murine Xist sequence. Mamm Genome. 1994 Jul;5(7):416-23

J:25955 Horn JM, et al., A member of the caudal family of homeobox genes maps to the X-inactivation centre region of the mouse and human X chromosomes. Hum Mol Genet. 1995 Jun;4(6):1041-7

J:30901 Rougeulle C, et al., Cloning and characterization of a murine brain specific gene Bpx and its human homologue lying within the Xic candidate region. Hum Mol Genet. 1996 Jan;5(1):41-9

J:36484 Simmler MC, et al., A 94 kb genomic sequence 3' to the murine Xist gene reveals an AT rich region containing a new testis specific gene Tsx. Hum Mol Genet. 1996 Nov;5(11):1713-26

J:43485 Simmler MC, et al., Localization and expression analysis of a novel conserved brain expressed transcript, Brx/BRX, lying within the Xic/XIC candidate region. Mamm Genome. 1997 Oct;8(10):760-6

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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