GO Annotations Graph

• Symbol: Neil3
• Name: nei like 3 (E. coli)
• ID: MGI:2384588

GO annotations

A table of the annotations represented in this image is provided below.

• Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
• Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
• Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
• Graph generated Fri Mar 10 20:53:16 2023.

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Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP Inferred from experiment

HMP Inferred from high throughput mutant phenotype

HGI Inferred from high throughput genetic interaction

HDA Inferred from high throughput direct assay

HEP Inferred from high throughput expression pattern

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

Homology:

IAS Inferred from ancestral sequence

IBA Inferred from biological aspect of ancestor

IBD Inferred from biological aspect of descendant

IKR Inferred from key residues

IMR Inferred from missing residues

IRD Inferred from rapid divergence

ISA Inferred from sequence alignment

ISM Inferred from sequence model

ISO Inferred from sequence orthology

ISS Inferred from sequence or structural similarity

Automated:

IEA Inferred from electronic annotation

RCA Reviewed computational analysis

Other:

IC Inferred by curator

NAS Non-traceable author statement

ND No biological data available

TAS Traceable author statement

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Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0000405	bubble DNA binding	IDA	J:158756
Molecular Function	GO:0003824	catalytic activity	IEA	J:60000
Molecular Function	GO:0140078	class I DNA-(apurinic or apyrimidinic site) endonuclease activity	IEA	J:72245
Molecular Function	GO:0003684	damaged DNA binding	IEA	J:72247
Molecular Function	GO:0003677	DNA binding	IEA	J:72247
Molecular Function	GO:0003677	DNA binding	IEA	J:60000
Molecular Function	GO:0019104	DNA N-glycosylase activity	ISO	J:164563
Molecular Function	GO:0019104	DNA N-glycosylase activity	IDA	J:158756
Molecular Function	GO:0019104	DNA N-glycosylase activity	TAS	Reactome:R-MMU-9629485
Molecular Function	GO:0019104	DNA N-glycosylase activity	TAS	Reactome:R-MMU-9629509
Molecular Function	GO:0019104	DNA N-glycosylase activity	TAS	Reactome:R-MMU-9629510
Molecular Function	GO:0019104	DNA N-glycosylase activity	IBA	J:265628
Molecular Function	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	ISO	J:164563
Molecular Function	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IDA	J:158756
Molecular Function	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IBA	J:265628
Molecular Function	GO:0003690	double-stranded DNA binding	IDA	J:158756
Molecular Function	GO:0016787	hydrolase activity	IEA	J:60000
Molecular Function	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEA	J:60000
Molecular Function	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEA	J:72247
Molecular Function	GO:0016829	lyase activity	IEA	J:60000
Molecular Function	GO:0046872	metal ion binding	IEA	J:60000
Molecular Function	GO:0003676	nucleic acid binding	IEA	J:72247
Molecular Function	GO:0003697	single-stranded DNA binding	ISO	J:164563
Molecular Function	GO:0003697	single-stranded DNA binding	IDA	J:158756
Molecular Function	GO:0008270	zinc ion binding	IEA	J:72247
Cellular Component	GO:0005694	chromosome	IEA	J:60000
Cellular Component	GO:0005654	nucleoplasm	ISO	J:164563
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-9629360
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-9629363
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-9629370
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-9629485
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-9629509
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-9629510
Cellular Component	GO:0005634	nucleus	ISO	J:164563
Cellular Component	GO:0005634	nucleus	IDA	J:146662
Cellular Component	GO:0005634	nucleus	IBA	J:265628
Biological Process	GO:0006284	base-excision repair	ISO	J:164563
Biological Process	GO:0006284	base-excision repair	IDA	J:158756
Biological Process	GO:0006284	base-excision repair	IBA	J:265628
Biological Process	GO:0006974	DNA damage response	IEA	J:60000
Biological Process	GO:0006281	DNA repair	IEA	J:72247
Biological Process	GO:0006281	DNA repair	IEA	J:60000
Biological Process	GO:0008152	metabolic process	IEA	J:60000