Rn5s-ps1 Pseudogene Detail

Summary

• Symbol
  Rn5s-ps1
• Name
  5S RNA, pseudogene 1
• Synonyms
  5s RNA pseudogene

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:99528
  NCBI Gene: 19805
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:124328311-124328419 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 72.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_99528	pseudogene	Chr8:124328309-124328419 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220043717	rRNA gene	Chr8:119073353-119073471 (-)
BALB/cJ	ENSMUSG00180027812	rRNA gene	Chr8:118939971-118940079 (-)
C3H/HeJ	ENSMUSG00175032329	rRNA gene	Chr8:118977315-118977423 (-)
C57BL/6NJ	ENSMUSG00215035979	rRNA gene	Chr8:118580352-118580460 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185040546	rRNA gene	Chr8:125212941-125213049 (-)
DBA/2J	ENSMUSG00185036740	rRNA gene	Chr8:125216384-125216492 (-)
DBA/2J	ENSMUSG00185040616	rRNA gene	Chr8:125221538-125221646 (-)
DBA/2J	ENSMUSG00185040326	rRNA gene	Chr8:125188952-125189060 (-)
DBA/2J	ENSMUSG00185039576	rRNA gene	Chr8:125036387-125036495 (-)
DBA/2J	ENSMUSG00185040346	rRNA gene	Chr8:125192397-125192505 (-)
DBA/2J	ENSMUSG00185040432	rRNA gene	Chr8:125202642-125202750 (-)
DBA/2J	ENSMUSG00185040294	rRNA gene	Chr8:125185540-125185648 (-)
DBA/2J	ENSMUSG00185040467	rRNA gene	Chr8:125206083-125206191 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000042788	rRNA gene	Chr8:127376323-127376441 (-)
JF1/MsJ	ENSUMUG00000042603	rRNA gene	Chr8:127354674-127354792 (-)
LP/J	ENSMUSG00230030731	rRNA gene	Chr8:128740553-128740671 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225020932	rRNA gene	Chr8:132146442-132146550 (-)
NZO/HlLtJ	ENSMUSG00225020917	rRNA gene	Chr8:132144757-132144865 (-)
NZO/HlLtJ	ENSMUSG00225020896	rRNA gene	Chr8:132139633-132139741 (-)
NZO/HlLtJ	ENSMUSG00225020907	rRNA gene	Chr8:132143070-132143178 (-)
NZO/HlLtJ	ENSMUSG00225020957	rRNA gene	Chr8:132151557-132151665 (-)
NZO/HlLtJ	ENSMUSG00225020835	rRNA gene	Chr8:132149872-132149980 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005032063	rRNA gene	Chr8:119714147-119714255 (-)

Homology

• Gene Tree
  Rn5s-ps1
  

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000119925 (Evidence)
• NCBI Gene
  19805

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119925	Ensembl Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	ENSMUST00000093696	Ensembl | MGI Sequence Detail	109	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 2

Other
Accession IDs

MGD-MRK-16306

References

• Summaries
  All 6
• Earliest
  J:18337 Hallenberg C, et al., Characterization of 5S rRNA genes from mouse. Gene. 1994 May 16;142(2):291-5