Zfa-ps Pseudogene Detail

Summary

• Symbol
  Zfa-ps
• Name
  zinc finger protein, autosomal, pseudogene
• Synonyms
  Zfa

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:99153
  NCBI Gene: 22639
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:52418416-52421835 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 26.71 cM, cytoband B3-B4
• Mapping Data
  15 experiments

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  19
• RFLP
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_99153	pseudogene	Chr10:52418416-52421835 (-)
129S1/SvImJ	ENSMUSG00200007467	pseudogene	Chr10:49315500-49318919 (-)
A/J	ENSMUSG00195003199	pseudogene	Chr10:49583495-49586914 (-)
AKR/J	ENSMUSG00220006932	pseudogene	Chr10:49271218-49274637 (-)
BALB/cJ	ENSMUSG00180012471	pseudogene	Chr10:49713115-49716534 (-)
C3H/HeJ	ENSMUSG00175010747	pseudogene	Chr10:49456086-49459505 (-)
C57BL/6NJ	ENSMUSG00215002332	pseudogene	Chr10:49218201-49221620 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036924	pseudogene	ChrX:88718772-88738594 (-)
CAST/EiJ	ENSTCUG00005008947	pseudogene	Chr10:49410441-49413850 (-)
CBA/J	ENSMUSG00210008754	pseudogene	Chr10:49361939-49365358 (-)
DBA/2J	ENSMUSG00185003431	pseudogene	Chr10:49513620-49517039 (-)
FVB/NJ	ENSMUSG00205005435	pseudogene	Chr10:49430276-49433695 (-)
JF1/MsJ	ENSUMUG00000031186	pseudogene	Chr10:49173152-49176561 (-)
LP/J	ENSMUSG00230024570	pseudogene	Chr10:51315053-51318472 (-)
NOD/ShiLtJ	ENSMUSG00190005795	pseudogene	Chr10:49679717-49683136 (-)
NZO/HlLtJ	ENSMUSG00225023014	pseudogene	Chr10:55596010-55599429 (-)
PWK/PhJ	ENSLUMG00010005012	pseudogene	Chr10:49307919-49311328 (-)
SPRET/EiJ	ENSMSPG00010013865	pseudogene	Chr10:50653458-50656868 (-)
WSB/EiJ	ENSIUOG00005015387	pseudogene	Chr10:49315007-49318426 (-)

Homology

• Human Ortholog
  ZFY, zinc finger protein Y-linked

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  ZFY, zinc finger protein Y-linked
  
• Synonyms
  ZNF911
• Links
  HGNC:12870

  NCBI Gene ID: 7544

  UniProt: P08048

  
  
• Chr Location
  Yp11.2; chrY:2935281-2982512 (+)  GRCh38

---

• MGI Vertebrate Homology
  Zfa-ps stringent orthology
  1 human;1 mouse;1 zebrafish
  
• HCOP
  vertebrate homology predictions: ZFY

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 3 genetic backgrounds
  8 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  2 involving Zfa-ps
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  22 strains or lines available

Male homozygous null were fertile and showed no spermatogenic or testicular defects.

Expression

• Assay Results
  66
• Tissues
  19
• cDNA Data
  6
• Literature Summary
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1
• CCDS
  CCDS23842.1

• Ensembl
  ENSMUSG00000049576 (Evidence), ENSMUSG00000121690 (Evidence)
• NCBI Gene
  22639

Representative Sequences			Length	Strain/Species
genomic	22639	NCBI Gene Model | MGI Sequence Detail	3420	C57BL/6J
transcript	NR_037920	RefSeq | MGI Sequence Detail	3420	ZRU/MplStud
polypeptide	P23607	UniProt | EBI | MGI Sequence Detail		Not Loaded

Protein
Information

• UniProt
  1 Sequence
• Protein Ontology
  PR:000018244 zinc finger autosomal protein
  (term hierarchy)

Molecular
Reagents

• All nucleic 17

  Genomic 3

  cDNA 8

  Primer pair 2

  Other 4

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-15851

References

• Summaries
  All 41

  Developmental Gene Expression 2

  Phenotypes 8
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:174767 Tang F, et al., Deterministic and stochastic allele specific gene expression in single mouse blastomeres. PLoS One. 2011;6(6):e21208