Tyms-ps Pseudogene Detail

Summary

• Symbol
  Tyms-ps
• Name
  thymidylate synthase, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:98879
  NCBI Gene: 22172
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:87802709-87803623 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_98879	pseudogene	Chr10:87802533-87803879 (+)
129S1/SvImJ	ENSMUSG00200030488	pseudogene	Chr10:84300049-84300963 (+)
A/J	ENSMUSG00195023275	pseudogene	Chr10:84756679-84757596 (+)
AKR/J	ENSMUSG00220022703	pseudogene	Chr10:84363173-84364090 (+)
BALB/cJ	ENSMUSG00180033688	pseudogene	Chr10:84759718-84760635 (+)
C3H/HeJ	ENSMUSG00175022773	pseudogene	Chr10:84650208-84651125 (+)
C57BL/6NJ	ENSMUSG00215029431	pseudogene	Chr10:84294888-84295802 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037460	pseudogene	Chr10:84030055-84030972 (+)
CBA/J	ENSMUSG00210038669	pseudogene	Chr10:84490657-84491574 (+)
DBA/2J	ENSMUSG00185044568	pseudogene	Chr10:84716372-84717289 (+)
FVB/NJ	ENSMUSG00205019661	pseudogene	Chr10:84345844-84346761 (+)
JF1/MsJ	ENSUMUG00000022321	pseudogene	Chr10:86054342-86055259 (+)
LP/J	ENSMUSG00230018042	pseudogene	Chr10:86582618-86583532 (+)
NOD/ShiLtJ	ENSMUSG00190019885	pseudogene	Chr10:84741977-84742894 (+)
NZO/HlLtJ	ENSMUSG00225053386	pseudogene	Chr10:90865290-90866207 (+)
PWK/PhJ	ENSLUMG00010023333	pseudogene	Chr10:84342072-84342989 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005037428	pseudogene	Chr10:84409327-84410241 (+)

Homology

• Gene Tree
  Tyms-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Tyms-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000112222 (Evidence)
• NCBI Gene
  22172

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112222	Ensembl Gene Model | MGI Sequence Detail	915	C57BL/6J
transcript	ENSMUST00000219550	Ensembl | MGI Sequence Detail	915	Not Applicable

Molecular
Reagents

• All nucleic 3

  Genomic 1

  cDNA 2

  
  

  Microarray probesets 4

Other
Accession IDs

MGD-MRK-15314

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582