Txn-ps1 Pseudogene Detail

Summary

• Symbol
  Txn-ps1
• Name
  thioredoxin, pseudogene 1

• Feature Type
  pseudogene
• IDs
  MGI:98875
  NCBI Gene: 22167
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:44503083-44503391 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 23.63 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  19
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_98875	pseudogene	Chr1:44503028-44503453 (-)
129S1/SvImJ	ENSMUSG00200002279	pseudogene	Chr1:42153450-42153758 (-)
A/J	ENSMUSG00195002157	pseudogene	Chr1:41888540-41888848 (-)
AKR/J	ENSMUSG00220004198	pseudogene	Chr1:41835765-41836073 (-)
BALB/cJ	ENSMUSG00180003432	pseudogene	Chr1:41848716-41849024 (-)
C3H/HeJ	ENSMUSG00175000259	pseudogene	Chr1:41923758-41924066 (-)
C57BL/6NJ	ENSMUSG00215003134	pseudogene	Chr1:41820006-41820314 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009081	pseudogene	Chr1:38974219-38974508 (-)
CAST/EiJ	ENSTCUG00005001112	pseudogene	Chr1:41896921-41897229 (-)
CBA/J	ENSMUSG00210030072	pseudogene	Chr1:41601866-41602174 (-)
DBA/2J	ENSMUSG00185031648	pseudogene	Chr1:42743199-42743507 (-)
FVB/NJ	ENSMUSG00205004081	pseudogene	Chr1:41784895-41785203 (-)
JF1/MsJ	ENSUMUG00000002592	pseudogene	Chr1:41861387-41861695 (-)
LP/J	ENSMUSG00230001597	pseudogene	Chr1:42734254-42734562 (-)
NOD/ShiLtJ	ENSMUSG00190002781	pseudogene	Chr1:41809267-41809575 (-)
NZO/HlLtJ	ENSMUSG00225001180	pseudogene	Chr1:45969349-45969657 (-)
PWK/PhJ	ENSLUMG00010002885	pseudogene	Chr1:41408479-41408787 (-)
SPRET/EiJ	ENSMSPG00010014190	pseudogene	Chr1:43051268-43051576 (-)
WSB/EiJ	ENSIUOG00005003860	pseudogene	Chr1:41733490-41733798 (-)

Homology

• Gene Tree
  Txn-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Txn-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000101567 (Evidence)
• NCBI Gene
  22167

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101567	Ensembl Gene Model | MGI Sequence Detail	309	C57BL/6J
transcript	ENSMUST00000186385	Ensembl | MGI Sequence Detail	309	Not Applicable

Molecular
Reagents

• All nucleic 4

  Genomic 3

  cDNA 1

Other
Accession IDs

MGD-MRK-15310

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:18308 Taketo M, et al., Mouse thioredoxin gene maps on chromosome 4, whereas its pseudogene maps on chromosome 1. Genomics. 1994 May 1;21(1):251-3
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14