Trp53-ps Pseudogene Detail

Summary

• Symbol
  Trp53-ps
• Name
  transformation related protein 53, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:98835
  NCBI Gene: 22060
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:54726708-54727869 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 28.30 cM
• Mapping Data
  6 experiments

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  16
• PCR
  1
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_98835	pseudogene	Chr17:54726625-54728264 (+)
129S1/SvImJ	ENSMUSG00200029240	pseudogene	Chr17:49949469-49950631 (+)
A/J	ENSMUSG00195007086	pseudogene	Chr17:51383882-51385042 (+)
AKR/J	ENSMUSG00220037226	pseudogene	Chr17:50400193-50401356 (+)
BALB/cJ	ENSMUSG00180006249	pseudogene	Chr17:51139959-51141120 (+)
C3H/HeJ	ENSMUSG00175007468	pseudogene	Chr17:50447136-50448296 (+)
C57BL/6NJ	ENSMUSG00215035983	pseudogene	Chr17:50075083-50076244 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009626	pseudogene	Chr11:64324654-64324794 (+)
CAST/EiJ	ENSTCUG00005019244	pseudogene	Chr17:51225134-51226288 (+)
CBA/J	ENSMUSG00210040726	pseudogene	Chr17:50227355-50228515 (+)
DBA/2J	ENSMUSG00185009685	pseudogene	Chr17:53097245-53098405 (+)
FVB/NJ	ENSMUSG00205007456	pseudogene	Chr17:50754435-50755597 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230028938	pseudogene	Chr17:54037668-54038830 (+)
NOD/ShiLtJ	ENSMUSG00190018251	pseudogene	Chr17:50207841-50209001 (+)
NZO/HlLtJ	ENSMUSG00225043352	pseudogene	Chr17:56337095-56338255 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005024610	pseudogene	Chr17:51122079-51123239 (+)

Homology

• Gene Tree
  Trp53-ps
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090704 (Evidence)
• NCBI Gene
  22060

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090704	Ensembl Gene Model | MGI Sequence Detail	1162	C57BL/6J
transcript	ENSMUST00000166597	Ensembl | MGI Sequence Detail	1162	Not Applicable

Molecular
Reagents

• All nucleic 5

  Genomic 2

  cDNA 1

  Primer pair 1

  Other 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGD-MRK-15248

References

• Summaries
  All 23
• Earliest
  J:7231 Oren M, et al., Analysis of recombinant DNA clones specific for the murine p53 cellular tumor antigen. EMBO J. 1983;2(10):1633-9
• Latest
  J:347871 Xu Y, et al., Kielin/chordin-like protein deficiency aggravates pressure overload-induced cardiac dysfunction and remodeling via P53/P21/CCNB1 signaling in mice. FASEB J. 2024 Mar 15;38(5):e23513

TSS for Trp53-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145235	Chr17:54727746-54727783 (+)	1,057 bp