Tpi-rs10 Pseudogene Detail

Summary

• Symbol
  Tpi-rs10
• Name
  triosephosphate isomerase related sequence 10
• Synonyms
  Gm7744, Tpi-10

• Feature Type
  pseudogene
• IDs
  MGI:98798
  NCBI Gene: 665674
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:20681644-20682421 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 11.41 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_98798	pseudogene	Chr18:20681085-20682421 (-)
129S1/SvImJ	ENSMUSG00200020116	pseudogene	Chr18:17688607-17689385 (-)
A/J	ENSMUSG00195002399	pseudogene	Chr18:17832815-17833592 (-)
AKR/J	ENSMUSG00220012100	pseudogene	Chr18:17834625-17835402 (-)
BALB/cJ	ENSMUSG00180004109	pseudogene	Chr18:18294104-18294881 (-)
C3H/HeJ	ENSMUSG00175004450	pseudogene	Chr18:17781313-17782090 (-)
C57BL/6NJ	ENSMUSG00215003690	pseudogene	Chr18:17533203-17533980 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015061	pseudogene	Chr18:17575139-17575912 (-)
CBA/J	ENSMUSG00210020381	pseudogene	Chr18:17846511-17847289 (-)
DBA/2J	ENSMUSG00185008483	pseudogene	Chr18:17803764-17804542 (-)
FVB/NJ	ENSMUSG00205016743	pseudogene	Chr18:17541642-17542420 (-)
JF1/MsJ	ENSUMUG00000025301	pseudogene	Chr18:17853974-17854751 (-)
LP/J	ENSMUSG00230012550	pseudogene	Chr18:19884841-19885619 (-)
NOD/ShiLtJ	ENSMUSG00190017453	pseudogene	Chr18:17618498-17619276 (-)
NZO/HlLtJ	ENSMUSG00225028302	pseudogene	Chr18:19806880-19807657 (-)
PWK/PhJ	ENSLUMG00010015908	pseudogene	Chr18:18033457-18034234 (-)
SPRET/EiJ	ENSMSPG00010004815	pseudogene	Chr18:17948899-17949676 (-)
WSB/EiJ	ENSIUOG00005019921	pseudogene	Chr18:17644606-17645384 (-)

Homology

• Gene Tree
  Tpi-rs10
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000117627 (Evidence)
• NCBI Gene
  665674

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117627	Ensembl Gene Model | MGI Sequence Detail	778	C57BL/6J
transcript	ENSMUST00000234000	Ensembl | MGI Sequence Detail	778	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-15181, MGD-MRK-15190, MGI:3643925

References

• Summaries
  All 7
• Earliest
  J:1700 Johnson KR, et al., A multipoint genetic linkage map of mouse chromosome 18. Genomics. 1992 Aug;13(4):1143-9

TSS for Tpi-rs10:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152588	Chr18:20682411-20682426 (-)	2 bp