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Trgv6 Gene Detail
Summary
  • Symbol
    Trgv6
  • Name
    T cell receptor gamma, variable 6
  • Synonyms
    Tcrg-V6
  • Feature Type
    gene segment
  • IDs
    MGI:98636
    NCBI Gene: 21640
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:19374538-19375099 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 6.89 cM
Strain
Comparison
more
  • SNPs within 2kb
    8 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98636
 gene segment Chr13:19374526-19375099 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002512
 gene segment Chr13:16300735-16301308 (+)
A/J MGP_AJ_G0002485
 gene segment Chr13:16083259-16083832 (+)
AKR/J MGP_AKRJ_G0002471
 gene segment Chr13:16277952-16278525 (+)
BALB/cJ MGP_BALBcJ_G0002481
 gene segment Chr13:16047801-16048374 (+)
C3H/HeJ MGP_C3HHeJ_G0002458
 gene segment Chr13:16400408-16400981 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002606
 gene segment Chr13:16997882-16998455 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002204
 gene segment Chr13:14538572-14539151 (+)
CAST/EiJ MGP_CASTEiJ_G0002420
 gene segment Chr13:16142615-16143189 (+)
CBA/J MGP_CBAJ_G0002449
 gene segment Chr13:17561448-17562021 (+)
DBA/2J MGP_DBA2J_G0002455
 gene segment Chr13:15661045-15661618 (+)
FVB/NJ MGP_FVBNJ_G0002468
 gene segment Chr13:15349284-15349857 (+)
LP/J MGP_LPJ_G0002510
 gene segment Chr13:16587045-16587618 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002438
 gene segment Chr13:17958783-17959356 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002601
 gene segment Chr13:16090412-16090985 (+)
PWK/PhJ MGP_PWKPhJ_G0002395
 gene segment Chr13:15698671-15699244 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002332
 gene segment Chr13:15213407-15213981 (+)
WSB/EiJ MGP_WSBEiJ_G0002451
 gene segment Chr13:16124502-16125075 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 21640 NCBI Gene Model | MGI Sequence Detail 562 C57BL/6J ±  kb
transcript Z48592 GenBank | ENA | DDBJ | MGI Sequence Detail 295 ABL  
polypeptide A0A075B5Y8 UniProt | EBI | MGI Sequence Detail 134 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 10
    Genomic 4
    cDNA 1
    Other 5
Other
Accession IDs
less
MGD-MRK-14928
References
more
  • Summaries
    All 14
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:8286 Garman RD, et al., Diversity, rearrangement, and expression of murine T cell gamma genes. Cell. 1986 Jun 6;45(5):733-42
  • Latest
    J:327132 Reis BS, et al., TCR-Vgammadelta usage distinguishes protumor from antitumor intestinal gammadelta T cell subsets. Science. 2022 Jul 15;377(6603):276-284
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory