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Trgv1 Gene Detail
Summary
  • Symbol
    Trgv1
  • Name
    T cell receptor gamma, variable 1
  • Synonyms
    Gm16602
  • Feature Type
    gene segment
  • IDs
    MGI:98631
    NCBI Gene: 21632
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:19524186-19524624 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 6.89 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    53 from dbSNP Build 142
  • Strain Annotations
    7
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98631
gene segment Chr13:19524159-19524624 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002516
gene segment Chr13:16491052-16491517 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002475
gene segment Chr13:16456283-16456748 (+)
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002609
gene segment Chr13:17147431-17148416 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002207
gene segment Chr13:14618552-14619035 (+)
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0002605
gene segment Chr13:16266893-16267358 (+)
PWK/PhJ MGP_PWKPhJ_G0002398
gene segment Chr13:15906636-15907124 (+)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRGV11, T cell receptor gamma variable 11 (non-functional)
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRGV11, T cell receptor gamma variable 11 (non-functional)
  • Synonyms
    TCRGV11, V4P
  • Links
    NCBI Gene ID: 6985
    UniProt: A0A075B6L2

  • Chr Location
    7p14.1; chr7:38291616-38292078 (-)  GRCh38.p7

Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 21632 NCBI Gene Model | MGI Sequence Detail 439 C57BL/6J ±  kb
transcript Z48588 GenBank | ENA | DDBJ | MGI Sequence Detail 290 ABL  
polypeptide P06325 UniProt | EBI | MGI Sequence Detail 135 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 11
    Genomic 5
    cDNA 5
    Other 1
Other
Accession IDs
less
MGD-MRK-14923, MGI:4439526
References
more
  • Summaries
    All 17
    Gene Ontology 1
  • Earliest
    J:7709 Hayday AC, et al., Structure, organization, and somatic rearrangement of T cell gamma genes. Cell. 1985 Feb;40(2):259-69
  • Latest
    J:92754 Dalton JE, et al., Fas-Fas ligand interactions are essential for the binding to and killing of activated macrophages by gammadelta T cells. J Immunol. 2004 Sep 15;173(6):3660-7

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
01/24/2023
MGI 6.22
The Jackson Laboratory