Trbv24 Gene Detail

Summary

• Symbol
  Trbv24
• Name
  T cell receptor beta, variable 24
• Synonyms
  Tcrb-V17

• Feature Type
  gene segment
  BioType Conflict
  
• IDs
  MGI:98591
  NCBI Gene: 100124689
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:41195025-41195491 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.32 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  19
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_98591	gene segment	Chr6:41195025-41195491 (+)
129S1/SvImJ	ENSMUSG00200047387	pseudogenic gene segment	Chr6:38252915-38253381 (+)
A/J	ENSMUSG00195042463	pseudogenic gene segment	Chr6:38222572-38223038 (+)
AKR/J	ENSMUSG00220009683	pseudogenic gene segment	Chr6:37823376-37823842 (+)
BALB/cJ	ENSMUSG00180046775	pseudogenic gene segment	Chr6:38350977-38351443 (+)
C3H/HeJ	ENSMUSG00175048918	pseudogenic gene segment	Chr6:38178108-38178574 (+)
C57BL/6NJ	ENSMUSG00215048379	pseudogenic gene segment	Chr6:38276757-38277223 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002285	pseudogenic gene segment	Chr6:35764290-35764731 (+)
CAST/EiJ	ENSTCUG00005037113	pseudogenic gene segment	Chr6:37749176-37749642 (+)
CBA/J	ENSMUSG00210052191	pseudogenic gene segment	Chr6:38229849-38230315 (+)
DBA/2J	ENSMUSG00185050238	pseudogenic gene segment	Chr6:38332352-38332818 (+)
FVB/NJ	ENSMUSG00205050465	pseudogenic gene segment	Chr6:38200675-38201141 (+)
JF1/MsJ	ENSUMUG00000028273	pseudogenic gene segment	Chr6:37947032-37947498 (+)
LP/J	ENSMUSG00230043323	pseudogenic gene segment	Chr6:39256052-39256518 (+)
NOD/ShiLtJ	ENSMUSG00190049060	pseudogenic gene segment	Chr6:38121796-38122262 (+)
NZO/HlLtJ	ENSMUSG00225020055	pseudogenic gene segment	Chr6:41238689-41239155 (+)
PWK/PhJ	ENSLUMG00010046828	pseudogenic gene segment	Chr6:37718340-37718806 (+)
SPRET/EiJ	ENSMSPG00010031071	pseudogenic gene segment	Chr6:38469587-38470056 (+)
WSB/EiJ	ENSIUOG00005036319	pseudogenic gene segment	Chr6:38450003-38450469 (+)

Homology

• Gene Tree
  Trbv24
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000102955 (Evidence)
• NCBI Gene
  100124689

Representative Sequences			Length	Strain/Species
genomic	100124689	NCBI Gene Model | MGI Sequence Detail	467	C57BL/6J

Molecular
Reagents

• All nucleic 5

  Genomic 4

  Other 1

Other
Accession IDs

MGD-MRK-14883, MGD-MRK-14890, MGI:98598

References

• Summaries
  All 12
• Earliest
  J:8863 Chou HS, et al., Germline organization of the murine T cell receptor beta-chain genes. Science. 1987 Oct 23;238(4826):545-8
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trbv24:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55861	Chr6:41195008-41195029 (+)	-6 bp