Rpl18-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl18-ps1
• Name
  ribosomal protein L18, pseudogene 1
• Synonyms
  Gm11580

• Feature Type
  pseudogene
• IDs
  MGI:98018
  NCBI Gene: 667100
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:60940057-60940581 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 30.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_98018	pseudogene	Chr1:60940021-60940623 (+)
129S1/SvImJ	ENSMUSG00200019135	pseudogene	Chr1:58439976-58440500 (+)
A/J	ENSMUSG00195030828	pseudogene	Chr1:57979308-57979832 (+)
AKR/J	ENSMUSG00220042223	pseudogene	Chr1:58074823-58074982 (+)
BALB/cJ	ENSMUSG00180014266	pseudogene	Chr1:58233855-58234379 (+)
C3H/HeJ	ENSMUSG00175001278	pseudogene	Chr1:58356631-58357155 (+)
C57BL/6NJ	ENSMUSG00215036019	pseudogene	Chr1:58288544-58289068 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014527	pseudogene	Chr1:58121259-58121783 (+)
CBA/J	ENSMUSG00210054205	pseudogene	Chr1:58042319-58042843 (+)
DBA/2J	ENSMUSG00185055724	pseudogene	Chr1:59161378-59161902 (+)
FVB/NJ	ENSMUSG00205027015	pseudogene	Chr1:57994171-57994695 (+)
JF1/MsJ	ENSUMUG00000032906	pseudogene	Chr11:103462791-103463315 (+)
JF1/MsJ	ENSUMUG00000047681	pseudogene	Chr1:58121652-58122176 (+)
JF1/MsJ	ENSUMUG00000040767	pseudogene	Chr17:43475635-43476158 (-)
LP/J	ENSMUSG00230029896	pseudogene	Chr1:59161838-59162362 (+)
NOD/ShiLtJ	ENSMUSG00190040504	pseudogene	Chr1:58226845-58227369 (+)
NZO/HlLtJ	ENSMUSG00225001442	pseudogene	Chr1:62385954-62386478 (+)
PWK/PhJ	ENSLUMG00010026313	pseudogene	Chr1:57648825-57649349 (+)
PWK/PhJ	ENSLUMG00010016977	pseudogene	Chr11:102985910-102986434 (+)
SPRET/EiJ	ENSMSPG00010026400	pseudogene	Chr1:59585885-59586408 (+)
WSB/EiJ	ENSIUOG00005022047	pseudogene	Chr1:57824051-57824575 (+)

Homology

• Gene Tree
  Rpl18-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl18-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000081382 (Evidence)
• NCBI Gene
  667100

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081382	Ensembl Gene Model | MGI Sequence Detail	525	C57BL/6J
transcript	ENSMUST00000121555	Ensembl | MGI Sequence Detail	525	Not Applicable

Other
Accession IDs

MGD-MRK-14041, MGI:3650548

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:28013 Hinsdale ME, et al., RNA expression and chromosomal location of the mouse long-chain acyl-CoA dehydrogenase gene. Genomics. 1995 Jul 20;28(2):163-70

TSS for Rpl18-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6952	Chr1:60940019-60940020 (+)	-37 bp