Rnu6-ps2 Pseudogene Detail

Summary

• Symbol
  Rnu6-ps2
• Name
  U6 small nuclear RNA, pseudogene 2
• Synonyms
  Gm24955

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:97991
  NCBI Gene: 19864
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:119385197-119385303 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97991	pseudogene	Chr4:119385047-119385366 (+)
129S1/SvImJ	ENSMUSG00200014643	snRNA gene	Chr4:113293151-113293257 (+)
A/J	ENSMUSG00195033809	snRNA gene	Chr4:114535786-114535892 (+)
AKR/J	ENSMUSG00220022093	snRNA gene	Chr4:113896833-113896939 (+)
BALB/cJ	ENSMUSG00180046988	snRNA gene	Chr4:112600862-112600968 (+)
C3H/HeJ	ENSMUSG00175025233	snRNA gene	Chr4:113614027-113614133 (+)
C57BL/6NJ	ENSMUSG00215039554	snRNA gene	Chr4:114723196-114723302 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045645	snRNA gene	Chr4:113417241-113417346 (+)
CBA/J	ENSMUSG00210052563	snRNA gene	Chr4:113220519-113220625 (+)
DBA/2J	ENSMUSG00185047531	snRNA gene	Chr4:114770764-114770870 (+)
FVB/NJ	ENSMUSG00205025673	snRNA gene	Chr4:112693298-112693404 (+)
JF1/MsJ	ENSUMUG00000025302	snRNA gene	Chr4:114676382-114676487 (+)
LP/J	ENSMUSG00230046561	snRNA gene	Chr4:118110902-118111008 (+)
NOD/ShiLtJ	ENSMUSG00190045140	snRNA gene	Chr4:112601190-112601296 (+)
NZO/HlLtJ	ENSMUSG00225017007	snRNA gene	Chr4:123654271-123654377 (+)
PWK/PhJ	ENSLUMG00010046450	snRNA gene	Chr4:112093441-112093546 (+)
SPRET/EiJ	ENSMSPG00010041213	snRNA gene	Chr4:114180084-114180190 (+)
WSB/EiJ	ENSIUOG00005047454	snRNA gene	Chr4:112910777-112910883 (+)

Homology

• Gene Tree
  Rnu6-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Rnu6-ps2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000119323 (Evidence)
• NCBI Gene
  19864

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119323	Ensembl Gene Model | MGI Sequence Detail	107	C57BL/6J
transcript	ENSMUST00000178059	Ensembl | MGI Sequence Detail	107	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGD-MRK-13999, MGI:5454732

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:6656 Ohshima Y, et al., Nucleotide sequences of mouse genomic loci including a gene or pseudogene for U6 (4.8S) nuclear RNA. Nucleic Acids Res. 1981 Oct 10;9(19):5145-58
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12