Snord3b-ps2 Pseudogene Detail

Summary

• Symbol
  Snord3b-ps2
• Name
  small nucleolar RNA, C/D box 3B, pseudogene 2
• Synonyms
  Gm22865, Rnu3b-ps2

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:97980
  NCBI Gene: 19853
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:120834570-120834783 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97980	pseudogene	Chr2:120834570-120834784 (+)
129S1/SvImJ	ENSMUSG00200049358	snoRNA gene	Chr2:117766113-117766326 (+)
A/J	ENSMUSG00195025281	snoRNA gene	Chr2:117807050-117807263 (+)
AKR/J	ENSMUSG00220043672	snoRNA gene	Chr2:117730378-117730591 (+)
BALB/cJ	ENSMUSG00180045838	snoRNA gene	Chr2:117607659-117607872 (+)
C3H/HeJ	ENSMUSG00175027981	snoRNA gene	Chr2:118081999-118082212 (+)
C57BL/6NJ	ENSMUSG00215033174	snoRNA gene	Chr2:117752863-117753076 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017351	snoRNA gene	Chr2:117016886-117017098 (+)
CBA/J	ENSMUSG00210007621	snoRNA gene	Chr2:117922934-117923147 (+)
DBA/2J	ENSMUSG00185048164	snoRNA gene	Chr2:117605010-117605223 (+)
FVB/NJ	ENSMUSG00205044511	snoRNA gene	Chr2:116831039-116831252 (+)
JF1/MsJ	ENSUMUG00000043730	snoRNA gene	Chr2:117501030-117501243 (+)
LP/J	ENSMUSG00230024032	snoRNA gene	Chr2:119425728-119425941 (+)
NOD/ShiLtJ	ENSMUSG00190046362	snoRNA gene	Chr2:117851147-117851360 (+)
NZO/HlLtJ	ENSMUSG00225004515	snoRNA gene	Chr2:127329534-127329747 (+)
PWK/PhJ	ENSLUMG00010048960	snoRNA gene	Chr2:117393198-117393411 (+)
SPRET/EiJ	ENSMSPG00010045354	snoRNA gene	Chr2:119833991-119834204 (+)
WSB/EiJ	ENSIUOG00005029072	snoRNA gene	Chr2:117579017-117579230 (+)

Homology

• Gene Tree
  Snord3b-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Snord3b-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000065883 (Evidence)
• NCBI Gene
  19853

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000065883	Ensembl Gene Model | MGI Sequence Detail	214	C57BL/6J
transcript	ENSMUST00000083949	Ensembl | MGI Sequence Detail	214	Not Applicable

Molecular
Reagents

• All nucleic 3

  Genomic 2

  Other 1

Other
Accession IDs

MGD-MRK-13982, MGD-MRK-13988, MGI:5452642, MGI:6434261

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:11033 Mazan S, et al., Composition and chromosomal localization of the small multigene family encoding mouse U3B nucleolar RNA. Cytogenet Cell Genet. 1991;56(1):18-22