Snord3b-ps1 Pseudogene Detail

Summary

• Symbol
  Snord3b-ps1
• Name
  small nucleolar RNA, C/D box 3B, pseudogene 1
• Synonyms
  Gm23927, Rnu3b-ps1

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:97979
  NCBI Gene: 19852
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:4128298-4128512 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97979	pseudogene	Chr19:4128297-4128512 (-)
129S1/SvImJ	ENSMUSG00200052539	snoRNA gene	Chr19:888825-889039 (-)
129S1/SvImJ	ENSMUSG00200052543	snoRNA gene	Chr19:888824-889039 (-)
A/J	ENSMUSG00195054016	snoRNA gene	Chr19:1280061-1280275 (-)
A/J	ENSMUSG00195054019	snoRNA gene	Chr19:1280060-1280275 (-)
AKR/J	ENSMUSG00220052095	snoRNA gene	Chr19:1053019-1053233 (-)
AKR/J	ENSMUSG00220052104	snoRNA gene	Chr19:1053018-1053233 (-)
BALB/cJ	ENSMUSG00180051640	snoRNA gene	Chr19:1654812-1655026 (-)
BALB/cJ	ENSMUSG00180051646	snoRNA gene	Chr19:1654811-1655026 (-)
C3H/HeJ	ENSMUSG00175015348	snoRNA gene	Chr19:899539-899754 (-)
C3H/HeJ	ENSMUSG00175015343	snoRNA gene	Chr19:899540-899754 (-)
C57BL/6NJ	ENSMUSG00215048250	snoRNA gene	Chr19:1127107-1127322 (-)
C57BL/6NJ	ENSMUSG00215048242	snoRNA gene	Chr19:1127108-1127322 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043602	snoRNA gene	Chr19:1034405-1034620 (-)
CAST/EiJ	ENSTCUG00005043592	snoRNA gene	Chr19:1034406-1034620 (-)
CBA/J	ENSMUSG00210050471	snoRNA gene	Chr19:899848-900063 (-)
CBA/J	ENSMUSG00210050468	snoRNA gene	Chr19:899849-900063 (-)
DBA/2J	ENSMUSG00185052336	snoRNA gene	Chr19:1276166-1276381 (-)
DBA/2J	ENSMUSG00185052316	snoRNA gene	Chr19:1276167-1276381 (-)
FVB/NJ	ENSMUSG00205053564	snoRNA gene	Chr19:1277391-1277606 (-)
FVB/NJ	ENSMUSG00205053560	snoRNA gene	Chr19:1277392-1277606 (-)
JF1/MsJ	ENSUMUG00000056297	snoRNA gene	Chr19:1261463-1261677 (-)
JF1/MsJ	ENSUMUG00000056303	snoRNA gene	Chr19:1261462-1261677 (-)
LP/J	ENSMUSG00230054223	snoRNA gene	Chr19:2194984-2195198 (-)
LP/J	ENSMUSG00230054244	snoRNA gene	Chr19:2194983-2195198 (-)
NOD/ShiLtJ	ENSMUSG00190053231	snoRNA gene	Chr19:821178-821393 (-)
NOD/ShiLtJ	ENSMUSG00190053225	snoRNA gene	Chr19:821179-821393 (-)
NZO/HlLtJ	ENSMUSG00225027214	snoRNA gene	Chr19:5903825-5904040 (-)
NZO/HlLtJ	ENSMUSG00225027158	snoRNA gene	Chr19:5903826-5904040 (-)
PWK/PhJ	ENSLUMG00010008980	snoRNA gene	Chr19:1038089-1038303 (-)
PWK/PhJ	ENSLUMG00010008985	snoRNA gene	Chr19:1038088-1038303 (-)
SPRET/EiJ	ENSMSPG00010050367	snoRNA gene	Chr19:1018356-1018571 (-)
SPRET/EiJ	ENSMSPG00010050358	snoRNA gene	Chr19:1018357-1018571 (-)
WSB/EiJ	ENSIUOG00005051112	snoRNA gene	Chr19:905358-905573 (-)
WSB/EiJ	ENSIUOG00005051109	snoRNA gene	Chr19:905359-905573 (-)

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000064400 (Evidence), ENSMUSG00000104921 (Evidence)
• NCBI Gene
  19852

Representative Sequences			Length	Strain/Species
genomic	19852	NCBI Gene Model | MGI Sequence Detail	215	C57BL/6J

Molecular
Reagents

• All nucleic 3

  Genomic 2

  Other 1

Other
Accession IDs

MGD-MRK-13981, MGD-MRK-13987, MGI:5453704, MGI:6434260

References

• Summaries
  All 9
• Earliest
  J:9826 Mazan S, et al., Mouse U3-RNA-processed pseudogenes are nonrandomly integrated into genomic DNA. Implications for the process of retrogene formation. Eur J Biochem. 1989 May 15;181(3):599-605
• Latest
  J:11033 Mazan S, et al., Composition and chromosomal localization of the small multigene family encoding mouse U3B nucleolar RNA. Cytogenet Cell Genet. 1991;56(1):18-22