Snord3a Gene Detail

Summary

• Symbol
  Snord3a
• Name
  small nucleolar RNA, C/D box 3A
• Synonyms
  Rnu3a

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:97977
  NCBI Gene: 19850
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:40134464-40134675 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 21.81 cM, cytoband B2-B4
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  36

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97977	snoRNA gene	Chr10:40134463-40134676 (+)
129S1/SvImJ	ENSMUSG00200009470	snoRNA gene	Chr10:36989526-36989738 (+)
129S1/SvImJ	ENSMUSG00200009458	snoRNA gene	Chr10:36989526-36989739 (+)
A/J	ENSMUSG00195018983	snoRNA gene	Chr10:37292371-37292584 (+)
A/J	ENSMUSG00195019015	snoRNA gene	Chr10:37292371-37292583 (+)
AKR/J	ENSMUSG00220028764	snoRNA gene	Chr10:36968965-36969177 (+)
AKR/J	ENSMUSG00220028724	snoRNA gene	Chr10:36968965-36969178 (+)
BALB/cJ	ENSMUSG00180018004	snoRNA gene	Chr10:37377582-37377794 (+)
BALB/cJ	ENSMUSG00180017985	snoRNA gene	Chr10:37377582-37377795 (+)
C3H/HeJ	ENSMUSG00175012301	snoRNA gene	Chr10:37171869-37172081 (+)
C3H/HeJ	ENSMUSG00175012293	snoRNA gene	Chr10:37171869-37172082 (+)
C57BL/6NJ	ENSMUSG00215010691	snoRNA gene	Chr10:36922450-36922663 (+)
C57BL/6NJ	ENSMUSG00215010712	snoRNA gene	Chr10:36922450-36922662 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035790	snoRNA gene	Chr10:35734582-35734794 (+)
CAST/EiJ	ENSTCUG00005028759	snoRNA gene	Chr10:37378554-37378766 (+)
CAST/EiJ	ENSTCUG00005028736	snoRNA gene	Chr10:37378554-37378767 (+)
CBA/J	ENSMUSG00210025780	snoRNA gene	Chr10:37065316-37065529 (+)
CBA/J	ENSMUSG00210025792	snoRNA gene	Chr10:37065316-37065528 (+)
DBA/2J	ENSMUSG00185008343	snoRNA gene	Chr10:37217953-37218165 (+)
DBA/2J	ENSMUSG00185008322	snoRNA gene	Chr10:37217953-37218166 (+)
FVB/NJ	ENSMUSG00205013693	snoRNA gene	Chr10:37132554-37132766 (+)
FVB/NJ	ENSMUSG00205013677	snoRNA gene	Chr10:37132554-37132767 (+)
JF1/MsJ	ENSUMUG00000034296	snoRNA gene	Chr10:37003728-37003941 (+)
JF1/MsJ	ENSUMUG00000034312	snoRNA gene	Chr10:37003728-37003940 (+)
LP/J	ENSMUSG00230016470	snoRNA gene	Chr10:38979610-38979822 (+)
LP/J	ENSMUSG00230016448	snoRNA gene	Chr10:38979610-38979823 (+)
NOD/ShiLtJ	ENSMUSG00190033773	snoRNA gene	Chr10:37346233-37346445 (+)
NOD/ShiLtJ	ENSMUSG00190033718	snoRNA gene	Chr10:37346233-37346446 (+)
NZO/HlLtJ	ENSMUSG00225018042	snoRNA gene	Chr10:43305473-43305686 (+)
NZO/HlLtJ	ENSMUSG00225018068	snoRNA gene	Chr10:43305473-43305685 (+)
PWK/PhJ	ENSLUMG00010008255	snoRNA gene	Chr10:37118849-37119062 (+)
PWK/PhJ	ENSLUMG00010008258	snoRNA gene	Chr10:37118849-37119061 (+)
SPRET/EiJ	ENSMSPG00010021478	snoRNA gene	Chr10:38143286-38143499 (+)
SPRET/EiJ	ENSMSPG00010021524	snoRNA gene	Chr10:38143286-38143498 (+)
WSB/EiJ	ENSIUOG00005015484	snoRNA gene	Chr10:36894829-36895042 (+)
WSB/EiJ	ENSIUOG00005015494	snoRNA gene	Chr10:36894829-36895041 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  3
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1

• Ensembl
  ENSMUSG00000106147 (Evidence), ENSMUSG00002074875 (Evidence)
• NCBI Gene
  19850

Representative Sequences			Length	Strain/Species
genomic	19850	NCBI Gene Model | MGI Sequence Detail	212	C57BL/6J
transcript	NR_002842	RefSeq | MGI Sequence Detail	212	C57BL/6

Molecular
Reagents

• All nucleic 4

  Genomic 3

  Other 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-13975, MGI:6434247

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:10592 Mazan S, et al., Presence of a differentially expressed U3A RNA variant in mouse. Structure and evolutive implications. FEBS Lett. 1990 Jul 2;267(1):121-5
• Latest
  J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;