Rnu1b1 Gene Detail

Summary

• Symbol
  Rnu1b1
• Name
  U1b1 small nuclear RNA
• Synonyms
  Rnu1b-1

• Feature Type
  snRNA gene
• IDs
  MGI:97974
  NCBI Gene: 19844
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:96267269-96267433 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.78 cM, cytoband D-G
• Mapping Data
  7 experiments

Strain
Comparison

• SNPs within 2kb
  45 from dbSNP Build 142
• Strain Annotations
  15
• RFLP
  3

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97974	snRNA gene	Chr3:96267269-96267433 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195049278	snRNA gene	Chr3:93260362-93260526 (-)
AKR/J	ENSMUSG00220043884	snRNA gene	Chr3:91645040-91645204 (-)
BALB/cJ	ENSMUSG00180042296	snRNA gene	Chr3:93254490-93254654 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215039491	snRNA gene	Chr3:93622447-93622611 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021222	snRNA gene	Chr3:93446740-93446904 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185046581	snRNA gene	Chr3:93863467-93863631 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000048722	snRNA gene	Chr3:92729198-92729362 (-)
LP/J	ENSMUSG00230046179	snRNA gene	Chr3:95795811-95795975 (-)
NOD/ShiLtJ	ENSMUSG00190050592	snRNA gene	Chr3:93961348-93961512 (-)
NZO/HlLtJ	ENSMUSG00225013038	snRNA gene	Chr3:98347022-98347186 (+)
NZO/HlLtJ	ENSMUSG00225012348	snRNA gene	Chr3:98216604-98216768 (-)
PWK/PhJ	ENSLUMG00010030388	snRNA gene	Chr3:92716309-92716473 (-)
SPRET/EiJ	ENSMSPG00010045584	snRNA gene	Chr3:93018552-93018716 (-)
WSB/EiJ	ENSIUOG00005032373	snRNA gene	Chr3:93362438-93362602 (-)

Homology

• Gene Tree
  Rnu1b1
  

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000118876 (Evidence)
• NCBI Gene
  19844

Representative Sequences			Length	Strain/Species
genomic	19844	NCBI Gene Model | MGI Sequence Detail	165	C57BL/6J
transcript	NR_004412	RefSeq | MGI Sequence Detail	165	Not Specified

Molecular
Reagents

• All nucleic 7

  Genomic 7

  
  

  Microarray probesets 9

Other
Accession IDs

MGD-MRK-13969, MGD-MRK-13971

References

• Summaries
  All 12
• Earliest
  J:7196 Marzluff WF, et al., Isolation and characterization of two linked mouse U1b small nuclear RNA genes. Nucleic Acids Res. 1983 Sep 24;11(18):6255-70
• Latest
  J:40966 Cheng Y, et al., Control of mouse U1 snRNA gene expression during in vitro differentiation of mouse embryonic stem cells. Nucleic Acids Res. 1997 Jun 1;25(11):2197-204