Rnu1a1 Gene Detail

Summary

• Symbol
  Rnu1a1
• Name
  U1a1 small nuclear RNA
• Synonyms
  Rnu1a-1

• Feature Type
  snRNA gene
• IDs
  MGI:97972
  NCBI Gene: 19842
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:87313693-87313856 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, cytoband D-E
• Mapping Data
  10 experiments

Strain
Comparison

• SNPs within 2kb
  13 from dbSNP Build 142
• Strain Annotations
  31
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97972	snRNA gene	Chr11:87313693-87313856 (+)
129S1/SvImJ	ENSMUSG00200032287	snRNA gene	Chr12:46740672-46740835 (+)
129S1/SvImJ	ENSMUSG00200020400	snRNA gene	Chr11:84443136-84443299 (+)
129S1/SvImJ	ENSMUSG00200032302	snRNA gene	Chr12:46744572-46744735 (+)
A/J	ENSMUSG00195009843	snRNA gene	Chr11:84297967-84298130 (+)
A/J	ENSMUSG00195019603	snRNA gene	Chr12:49310986-49311149 (+)
A/J	ENSMUSG00195019624	snRNA gene	Chr12:49314849-49315012 (+)
AKR/J	ENSMUSG00220028725	snRNA gene	Chr12:47359059-47359222 (-)
AKR/J	ENSMUSG00220012477	snRNA gene	Chr11:84497531-84497694 (+)
AKR/J	ENSMUSG00220028749	snRNA gene	Chr12:47362943-47363106 (-)
BALB/cJ	ENSMUSG00180012003	snRNA gene	Chr11:84504917-84505080 (+)
BALB/cJ	ENSMUSG00180006436	snRNA gene	Chr12:48335834-48335997 (+)
BALB/cJ	ENSMUSG00180006431	snRNA gene	Chr12:48331950-48332113 (+)
C3H/HeJ	ENSMUSG00175012387	snRNA gene	Chr12:51376979-51377142 (+)
C3H/HeJ	ENSMUSG00175012380	snRNA gene	Chr12:51373114-51373277 (+)
C3H/HeJ	ENSMUSG00175034039	snRNA gene	Chr11:84444578-84444741 (+)
C57BL/6NJ	ENSMUSG00215031944	snRNA gene	Chr11:84089289-84089452 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017376	snRNA gene	Chr11:83999831-83999994 (+)
CBA/J	ENSMUSG00210042210	snRNA gene	Chr11:84262126-84262289 (+)
DBA/2J	ENSMUSG00185020721	snRNA gene	Chr11:84578840-84579003 (+)
FVB/NJ	ENSMUSG00205022669	snRNA gene	Chr11:84457897-84458060 (+)
JF1/MsJ	ENSUMUG00000029029	snRNA gene	Chr11:84902990-84903153 (+)
LP/J	ENSMUSG00230030466	snRNA gene	Chr11:85612105-85612268 (+)
NOD/ShiLtJ	ENSMUSG00190020166	snRNA gene	Chr11:84604728-84604891 (+)
NOD/ShiLtJ	ENSMUSG00190017306	snRNA gene	Chr12:46874776-46874939 (-)
NOD/ShiLtJ	ENSMUSG00190017329	snRNA gene	Chr12:46828052-46828215 (+)
NOD/ShiLtJ	ENSMUSG00190017339	snRNA gene	Chr12:46831917-46832080 (+)
NZO/HlLtJ	ENSMUSG00225039790	snRNA gene	Chr11:87728145-87728308 (+)
PWK/PhJ	ENSLUMG00010034388	snRNA gene	Chr11:84411081-84411244 (+)
SPRET/EiJ	ENSMSPG00010029735	snRNA gene	Chr11:84862649-84862812 (+)
WSB/EiJ	ENSIUOG00005008250	snRNA gene	Chr11:84416993-84417156 (+)

Homology

• Gene Tree
  Rnu1a1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Rnu1a1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  1
• Tissues
  1
• Literature Summary
  1

Images

Tissue x Stage Matrix

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000119476 (Evidence)
• NCBI Gene
  19842

Representative Sequences			Length	Strain/Species
genomic	19842	NCBI Gene Model | MGI Sequence Detail	164	C57BL/6J
transcript	NR_004411	RefSeq | MGI Sequence Detail	164	ZRU/MplStud

Molecular
Reagents

• All nucleic 7

  Genomic 5

  Primer pair 2

Other
Accession IDs

MGD-MRK-13965, MGD-MRK-13967

References

• Summaries
  All 25

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:7430 Naylor SL, et al., Localization of human U1 small nuclear RNA genes to band p36.3 of chromosome 1 by in situ hybridization. Somat Cell Mol Genet. 1984 May;10(3):307-13
• Latest
  J:255730 Jimenez-Badillo SE, et al., Catsper1 promoter is bidirectional and regulates the expression of a novel lncRNA. Sci Rep. 2017 Oct 17;7(1):13351