Snord14c Gene Detail

Summary

• Symbol
  Snord14c
• Name
  small nucleolar RNA, C/D box 14C
• Synonyms
  Gm23107, Rnu14, U14

• Feature Type
  snoRNA gene
• IDs
  MGI:97971
  NCBI Gene: 108637
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:40714879-40714964 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 21.55 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97971	snoRNA gene	Chr9:40714879-40714965 (+)
129S1/SvImJ	ENSMUSG00200040258	snoRNA gene	Chr9:37794594-37794679 (+)
A/J	ENSMUSG00195049539	snoRNA gene	Chr9:37551488-37551573 (+)
AKR/J	ENSMUSG00220046736	snoRNA gene	Chr9:37633314-37633399 (+)
BALB/cJ	ENSMUSG00180046221	snoRNA gene	Chr9:37674741-37674826 (+)
C3H/HeJ	ENSMUSG00175048611	snoRNA gene	Chr9:37675300-37675385 (+)
C57BL/6NJ	ENSMUSG00215035684	snoRNA gene	Chr9:37632314-37632399 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045111	snoRNA gene	Chr9:37609222-37609307 (+)
CBA/J	ENSMUSG00210047565	snoRNA gene	Chr9:37722410-37722495 (+)
DBA/2J	ENSMUSG00185038431	snoRNA gene	Chr9:37771169-37771254 (+)
FVB/NJ	ENSMUSG00205041427	snoRNA gene	Chr9:38037792-38037877 (+)
JF1/MsJ	ENSUMUG00000048633	snoRNA gene	Chr9:37823001-37823086 (+)
LP/J	ENSMUSG00230035016	snoRNA gene	Chr9:38083777-38083862 (+)
NOD/ShiLtJ	ENSMUSG00190035459	snoRNA gene	Chr9:37854410-37854495 (+)
NZO/HlLtJ	ENSMUSG00225022586	snoRNA gene	Chr9:38052263-38052348 (+)
PWK/PhJ	ENSLUMG00010046772	snoRNA gene	Chr9:37790428-37790513 (+)
SPRET/EiJ	ENSMSPG00010034590	snoRNA gene	Chr9:38506492-38506577 (+)
WSB/EiJ	ENSIUOG00005045586	snoRNA gene	Chr9:37278944-37279029 (+)

Homology

• Gene Tree
  Snord14c
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000119805 (Evidence)
• NCBI Gene
  108637

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119805	Ensembl Gene Model | MGI Sequence Detail	86	C57BL/6J
transcript	ENSMUST00000083424	Ensembl | MGI Sequence Detail	86	Not Applicable

Molecular
Reagents

• All nucleic 5

  Genomic 5

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-13964, MGI:5452884

References

• Summaries
  All 11

  Gene Ontology 1
• Earliest
  J:10873 Liu J, et al., Mouse U14 snRNA is encoded in an intron of the mouse cognate hsc70 heat shock gene. Nucleic Acids Res. 1990 Nov 25;18(22):6565-71
• Latest
  J:58471 Eliceiri GL, Small nucleolar RNAs. Cell Mol Life Sci. 1999;56:22-31

TSS for Snord14c:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84484	Chr9:40713921-40713952 (+)	-942 bp