Rn7s1 Gene Detail

Summary

• Symbol
  Rn7s1
• Name
  7S RNA 1
• Synonyms
  Gm22405, Rn7s-1

• Feature Type
  SRP RNA gene
• IDs
  MGI:97950
  NCBI Gene: 103948
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:69206069-69206367 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	no annotation		Chr12:69206069-69206368 (+)
129S1/SvImJ	ENSMUSG00200033632	unclassified non-coding RNA gene	Chr12:61121054-61121353 (+)
A/J	ENSMUSG00195015636	unclassified non-coding RNA gene	Chr12:63814483-63814783 (+)
AKR/J	ENSMUSG00220015217	unclassified non-coding RNA gene	Chr12:61605797-61606096 (+)
BALB/cJ	ENSMUSG00180034021	unclassified non-coding RNA gene	Chr12:62813562-62813862 (+)
C3H/HeJ	ENSMUSG00175028175	unclassified non-coding RNA gene	Chr12:65908003-65908303 (+)
C57BL/6NJ	ENSMUSG00215030244	unclassified non-coding RNA gene	Chr12:62189663-62189962 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035279	unclassified non-coding RNA gene	Chr12:62158738-62159037 (+)
CBA/J	ENSMUSG00210030684	unclassified non-coding RNA gene	Chr12:62377957-62378257 (+)
DBA/2J	ENSMUSG00185004957	unclassified non-coding RNA gene	Chr12:64268161-64268460 (+)
FVB/NJ	ENSMUSG00205033415	unclassified non-coding RNA gene	Chr12:62000306-62000606 (+)
JF1/MsJ	ENSUMUG00000033097	unclassified non-coding RNA gene	Chr12:68236892-68237191 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190013541	unclassified non-coding RNA gene	Chr12:61427039-61427338 (+)
NZO/HlLtJ	ENSMUSG00225039101	unclassified non-coding RNA gene	Chr12:73323139-73323438 (+)
PWK/PhJ	ENSLUMG00010031608	unclassified non-coding RNA gene	Chr12:62323390-62323689 (+)
SPRET/EiJ	ENSMSPG00010027955	unclassified non-coding RNA gene	Chr12:64010522-64010821 (+)
WSB/EiJ	ENSIUOG00005012375	unclassified non-coding RNA gene	Chr12:62066992-62067291 (+)

Homology

• Gene Tree
  Rn7s1
  

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000118866 (Evidence)
• NCBI Gene
  103948

Representative Sequences			Length	Strain/Species
genomic	103948	NCBI Gene Model | MGI Sequence Detail	299	C57BL/6J
transcript	NR_052007	RefSeq | MGI Sequence Detail	299	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-13926, MGD-MRK-13938, MGI:5452182

References

• Summaries
  All 8
• Earliest
  J:32402 Balmain A, et al., Cloning and characterisation of the abundant cytoplasmic 7S RNA from mouse cells. Nucleic Acids Res. 1982 Jul 24;10(14):4259-77
• Latest
  J:26885 Wilson CL, et al., The metalloproteinase matrilysin is preferentially expressed by epithelial cells in a tissue-restricted pattern in the mouse. Mol Biol Cell. 1995 Jul;6(7):851-69