Pgk1-ps3 Pseudogene Detail

Summary

• Symbol
  Pgk1-ps3
• Name
  phosphoglycerate kinase 1, pseudogene 3
• Synonyms
  Pgk-1ps3

• Feature Type
  pseudogene
• IDs
  MGI:97558
  NCBI Gene: 100416868
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:18618702-18619902 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 5.16 cM
• Mapping Data
  6 experiments

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97558	pseudogene	Chr3:18618657-18620302 (+)
129S1/SvImJ	ENSMUSG00200018350	pseudogene	Chr3:15376063-15377263 (+)
A/J	ENSMUSG00195016838	pseudogene	Chr3:15450448-15451646 (+)
AKR/J	ENSMUSG00220009254	pseudogene	Chr3:15392500-15393700 (+)
BALB/cJ	ENSMUSG00180001016	pseudogene	Chr3:15457824-15459024 (+)
C3H/HeJ	ENSMUSG00175003237	pseudogene	Chr3:15470537-15471735 (+)
C57BL/6NJ	ENSMUSG00215001342	pseudogene	Chr3:15679173-15680373 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010761	pseudogene	Chr3:13828325-13829533 (+)
CAST/EiJ	ENSTCUG00005024897	pseudogene	Chr3:15404496-15405698 (+)
CBA/J	ENSMUSG00210001828	pseudogene	Chr3:15445871-15447069 (+)
DBA/2J	ENSMUSG00185000671	pseudogene	Chr3:15602334-15603532 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000019489	pseudogene	Chr3:15221649-15222847 (+)
LP/J	ENSMUSG00230004478	pseudogene	Chr3:17564195-17565395 (+)
NOD/ShiLtJ	ENSMUSG00190002469	pseudogene	Chr3:15764636-15765836 (+)
NZO/HlLtJ	ENSMUSG00225007322	pseudogene	Chr3:20152052-20153252 (+)
PWK/PhJ	ENSLUMG00010003307	pseudogene	Chr3:15269885-15271074 (+)
SPRET/EiJ	ENSMSPG00010001905	pseudogene	Chr3:15304281-15305485 (+)
WSB/EiJ	ENSIUOG00005001666	pseudogene	Chr3:15640545-15641743 (+)

Homology

• Gene Tree
  Pgk1-ps3
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Pgk1-ps3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105280 (Evidence)
• NCBI Gene
  100416868

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105280	Ensembl Gene Model | MGI Sequence Detail	1201	C57BL/6J
transcript	ENSMUST00000198338	Ensembl | MGI Sequence Detail	1201	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-13261, MGD-MRK-13269

References

• Summaries
  All 15

  Diseases 1

  Phenotypes 2
• Earliest
  J:9038 Adra CN, et al., The family of mouse phosphoglycerate kinase genes and pseudogenes. Somat Cell Mol Genet. 1988 Jan;14(1):69-81
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426