Pgk1-ps1 Pseudogene Detail

Summary

• Symbol
  Pgk1-ps1
• Name
  phosphoglycerate kinase 1, pseudogene 1
• Synonyms
  Pgk-1ps1

• Feature Type
  pseudogene
• IDs
  MGI:97556
  NCBI Gene: 18656
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:81705886-81706350 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 46.57 cM
• Mapping Data
  8 experiments

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97556	pseudogene	Chr16:81705886-81706603 (+)
129S1/SvImJ	ENSMUSG00200016278	pseudogene	Chr16:78594507-78594971 (+)
A/J	ENSMUSG00195023757	pseudogene	Chr16:78362712-78363176 (+)
AKR/J	ENSMUSG00220018028	pseudogene	Chr16:78555436-78555900 (+)
BALB/cJ	ENSMUSG00180002247	pseudogene	Chr16:78440939-78441403 (+)
C3H/HeJ	ENSMUSG00175009213	pseudogene	Chr16:78739155-78739619 (+)
C57BL/6NJ	ENSMUSG00215001724	pseudogene	Chr16:78566553-78567017 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007356	pseudogene	Chr16:78289364-78289828 (+)
CBA/J	ENSMUSG00210019694	pseudogene	Chr16:78666805-78667269 (+)
DBA/2J	ENSMUSG00185005445	pseudogene	Chr16:78601106-78601570 (+)
FVB/NJ	ENSMUSG00205014776	pseudogene	Chr16:78437853-78438317 (+)
JF1/MsJ	ENSUMUG00000012008	pseudogene	Chr16:78734282-78734745 (+)
LP/J	ENSMUSG00230019263	pseudogene	Chr16:81155386-81155850 (+)
NOD/ShiLtJ	ENSMUSG00190011100	pseudogene	Chr16:78594388-78594852 (+)
NZO/HlLtJ	ENSMUSG00225031123	pseudogene	Chr16:84303340-84303804 (+)
PWK/PhJ	ENSLUMG00010005349	pseudogene	Chr16:78381787-78382251 (+)
SPRET/EiJ	ENSMSPG00010015256	pseudogene	Chr16:79392514-79392978 (+)
WSB/EiJ	ENSIUOG00005017908	pseudogene	Chr16:78548163-78548627 (+)

Homology

• Gene Tree
  Pgk1-ps1
  

Human Diseases

• References
  7 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  375 phenotype references
  

• All Mutations and Alleles
  4
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Pgk1-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000116678 (Evidence)
• NCBI Gene
  18656

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116678	Ensembl Gene Model | MGI Sequence Detail	465	C57BL/6J
transcript	ENSMUST00000232535	Ensembl | MGI Sequence Detail	465	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-13259, MGD-MRK-13267

References

• Summaries
  All 387

  Diseases 7

  Phenotypes 375
• Earliest
  J:9038 Adra CN, et al., The family of mouse phosphoglycerate kinase genes and pseudogenes. Somat Cell Mol Genet. 1988 Jan;14(1):69-81
• Latest
  J:391449 Thibodeau J, et al., Loss of cystathionine-beta-synthase contributes to elevated OXPHOS, a vulnerability in Ara-C-resistant Myeloid Leukemia in Down syndrome. Biochem Pharmacol. 2026 Feb 13;247:117815